BAC Information

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BAC

Clone NameMSMg01-504P03
Chromosome11 (Build37)
Map Location 26,303,126 - 26,303,669
singlet/doubletsinglet
Overlap geneFancl
Upstream gene5730522E02Rik, LOC100042328, LOC100042345
Downstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P03.T7 (MSMg01no504_p03.b1)MSMg01-504P03.TJ (MSMg01no504_p03.g1)
ACCAG579702AG579703
length744733
length of high quality
(start - end)
417 (57 - 473)544 (88 - 631)
definitionCHROMAT_FILE: MSMg01no504_p03.b1 PHD_FILE: MSMg01no504_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:44 2005CHROMAT_FILE: MSMg01no504_p03.g1 PHD_FILE: MSMg01no504_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGATATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTTTTCCCTTAAGGGCCCCAATTCTTCCTCCTAA
TTTTACATAAGAGTATTCAAGTTCCATTGATTGATTGCTTGGCTGTGAGT
GTCTGCATCTGTCTGAGTCAGATGCTGGGTGGAGCCTCTCAGAGAACAGC
AATGCTAGACTCCTGTCTGAAAGCAAAACAGTATTGTTAATAGTGTCATT
AATTGGTGCCTGCCCATTGGATGGGTCTCAAACTGGGCTGGTTATTGGTT
GGTCATTCCCTCAGTCTTTGCTCCATCACAACGCCTGCATTTCTTGTATA
CAGGATAAGTGTTGGGCCAAAAGTTTTGTGGATGGATTGGTGTCCTTATC
TCTCCATTGGAGTTTCTGCCTGGCCAGAGGAGGTGGCCTCTCCAGGTTCT
GTATCTCAAATGCTGTGAGTTACAGCTAAGAATATGGTATTGGATGTTAG
ATTGTGTCTTAGGCTTTTTCAGCATGTAATAAAATGATCATGCTATATTT
TTTTCAGTTTGCATATATGGTGGGTTATGTTGAACCTGTCCTATATCCTT
ATGAAGAAGCCTTTCTTGATCATGATGTATGACGGGTTTTGATGTGCTTA
ACAAAATGACTTTTGGTCTCGCAAGATATTTTTATTGATTATTCTCTGTC
TTATATGTCCACATAAACAACATTCGTCTGTAAGATTCCCCTTT
CTCAAATCAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTTCAATGTC
CACCACCCATAACCCAGGTCTGGGGAGATAAAGGCAGGAAGATCTGTGGG
GCTCGATGGTTGGCCAAGTTAGCTGAGTCAACAATCATCGTATCAGTGAG
ACACGCCATCTCAATGATAAGGTGTAACACAACTGAGAAAATTGACAATT
GACTATGTCCACATCCACATAGATATATGCATACACAAAACCATCAATAC
ACAGATAAATACCATTTGAAAAGTTTCAGAAACAATAAAGACTTATTAGA
TATAATAAGTGTTAGAAAAAATTCTTACCAAAATCATCTTCAATTCCATC
ATAAAACTCATTAGATCAGGAGAGTGCTTCATTCTCTAAATTAAAACATT
TTCAGATAATAACTCATGAAATGGATGTTCTAGTCATTGAATCTGAAATG
AATGTGGACATCTAAATCTGAAAGCCATTAATTACCGAAACATTTGTCAT
AATGTCTATTTCTGCCGACTTCATTTTGAAAGAGTGACTAAAACTTCTGT
CTTTGATTTCTATTGTGATAAACACCTTGACCACAAGAAAGGTGAGGAGG
AGAGGGTTTGTTTGAGTTTACAGCTAGAGTCCATCTTTAAGGCTAGAAAC
ACCATGCAAGAGCTGTAAGCAGATATCATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p03.g1 MSMg01no504_p03.g1 CHROMAT_FILE:
MSMg01no504_p03.g1 PHD_FILE: MSMg01no504_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:44 2005
         (544 letters)



>mm_chr11_26302726_26303669
          Length = 944

 Score = 1029 bits (532), Expect = 0.0
 Identities = 541/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacttcaatgtccaccacccataacccaggtctggggagataaaggcaggaagatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 tgacttcaatgtccaccacccataacccaggtctggggagataaaggcaggaagatctgt 885

                                                                       
Query: 61  ggggctcgatggttggccaagttagctgagtcaacaatcatcgtatcagtgagacacgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggggctcgatggttggccaagttagctgagtcaacaatcatcgtatcagtgagacacgcc 825

                                                                       
Query: 121 atctcaatgataaggtgtaacacaactgagaaaattgacaattgactatgtccacatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 atctcaatgataaggtgtaacacaactgagaaaattgacaattgactatgtccacatcca 765

                                                                       
Query: 181 catagatatatgcatacacaaaaccatcaatacacagataaataccatttgaaaagtttc 240
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cataaatatatgcatacgcaaaaccatcaatacacagataaataccatttgaaaagtttc 705

                                                                       
Query: 241 agaaacaataaagacttattagatataataagtgttagaaaaaattcttaccaaaatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agaaacaataaagacttattagatataataagtgttagaaaaaattcttaccaaaatcat 645

                                                                       
Query: 301 cttcaattccatcataaaactcattagatcaggagagtgcttcattctctaaattaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttcaattccatcataaaactcattagatcaggagagtgcttcattctctaaattaaaac 585

                                                                       
Query: 361 attttcagataataactcatgaaatggatgttctagtcattgaatctgaaatgaatgtgg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 584 attttcagataataactcatgaaatggatgttctagtcattgaatctgaaatgaatgtag 525

                                                                       
Query: 421 acatctaaatctgaaagccattaattaccgaaacatttgtcataatgtctatttctgccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 acatctaaatctgaaagccattaattaccgaaacatttgtcataatgtctatttctgccg 465

                                                                       
Query: 481 acttcattttgaaagagtgactaaaacttctgtctttgatttctattgtgataaacacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acttcattttgaaagagtgactaaaacttctgtctttgatttctattgtgataaacacct 405

               
Query: 541 tgac 544
           ||||
Sbjct: 404 tgac 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)