BAC Information

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BAC

Clone NameMSMg01-505C07
Chromosome11 (Build37)
Map Location 103,795,616 - 103,828,062
singlet/doubletdoublet
Overlap geneNsf
Upstream geneC1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, EG667631
Downstream geneArf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505C07.T7 (MSMg01no505_c07.b1)MSMg01-505C07.TJ (MSMg01no505_c07.g1)
ACCAG579853AG579854
length747752
length of high quality
(start - end)		696 (52 - 747)610 (85 - 694)
definitionCHROMAT_FILE: MSMg01no505_c07.b1 PHD_FILE: MSMg01no505_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:59 2005CHROMAT_FILE: MSMg01no505_c07.g1 PHD_FILE: MSMg01no505_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,795,616 - 103,796,322)(103,827,457 - 103,828,062)
sequence
TGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCGTGATCAACTGTTTGGAAAGCACCAATTTCCCATGACAT
GAACAGAGTCAAGGTCACAAGTTTACCTTCCAAATGAAAGAGCATTTTGT
TAGGGTCACACCTGGACCAGCCATCCATCAAAAACTTAACAATTTAAAGT
TTTCTATCTTCCCAGAGTCTCTTTACTTTCAAGTTTCTTCCCTTGATTAT
CTTTCCCCTAAACTTGCATCCCTTCCTTGGCCAATTCTTACACACTCTAC
AGTTCTCAGCTTAGACAATACTTATTCTAGGAGACAGTCTGGACAGCTGC
CCCTCCCCACAGAACTGAGAAGACATGCATGGAAGCCTTGAAGATGACCT
TCACTGTCTGCCTACACACTTGAATCATACCTAGGATAATTCTTAAGGTC
GGAGACTAGATTTTGCTCAGGACTACTCCTGGGCCTGGTACAGTGAGTGC
TTGTTAATCATAGATTACAAACCCAATTCAAACCACCCAAAGGACAAGTG
TCCAAGGCAGTATCCCTTCAAGGTCATTTAGGATATCACAGAATTAGATT
CAGATGACTTAATCACTACACAACTTGGGGCTAGGAAGATAGCTCTGAAG
GTAGGGACAAGGGATCCACACAGCAAACTGGATGAGGAACCTAGCCATGT
ATGGGAGCTCTGAGTTTGGCCAAGAGCTGATATCTCAGTGGATGAAA

NNNCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCGCCTCAATAAAA
TGGCGACTGGCTGGGGGCGGGAACAGCAACCAACCAATCATCCGCCGCCT
CCTGGGTACTCTTGCGCCTATGTCCGCGAAGTTACTTGAATGACAAAAAA
TCTGACCAATGGAAATGGCAATAAGGCTGGACGGGAGTAGGTCCGCCCCA
CCGCGACCTAGGCGACGGTACCACGCTCTGGAAATGCCGGTTTCATCTTC
CAATGGGAGCTCACCGCATTCGGGAGAGACGCGCCCACATGCCCCACCCG
AAGCCACAGACGACCAATCAGAAAAGCAAAAGGGTTTTCTATTTGCCCTG
CCAATCAACTCTGGTACTTTTCACGGATTGAACTAACCCGGGGAGCATTC
TGACCAACCCAACGCTGGTATGTGGGAGGAGCCAGGTTCAGAGAGATATT
TAAGGAAATTTGCTGTGGTTGAGCTAAAAGTAGAAACTGGTTTGGGAGCA
CAGTTCCTGGTCAGAAATACCCAGATTCCAACATCGAAATTAGGCATAAA
GAAGATTTCCTATTTGGTATGGAGTTAGACTGCGGCTGTTCTTGTATACA
AACTTTCAACATTAGGGAGAAATATAATCACCAGTACCTTAGCAGTCTCC
CAAAGCCTCAGTGCGCGTTTCATGAGAAAGACCCTAAATTACTCGGTACT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_c07.b1 MSMg01no505_c07.b1 CHROMAT_FILE:
MSMg01no505_c07.b1 PHD_FILE: MSMg01no505_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
         (696 letters)



>mm_chr11_103795428_103796523
          Length = 1096

 Score = 1226 bits (634), Expect = 0.0
 Identities = 682/708 (96%), Gaps = 18/708 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtgatcaactgtttggaaagcaccaatttcccatgacatgaacagagtcaaggt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gaattcgtgatcaagtgtttggaaagcaccaatttcccatgacatgaacagagtcaaggt 248

                                                                       
Query: 65  cacaagtttaccttccaaatgaaagagcattttgttagggtcacacctggaccagccatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacaagtttaccttccaaatgaaagagcattttgttagggtcacacctggaccagccatc 308

                                                                       
Query: 125 catcaaaaacttaacaatttaaagttttctatcttcccagagtctctttactttcaagtt 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 309 catcaaaaacttaacaatttaaagttttctatcttcctagagtctctttactttcaagtt 368

                                                                       
Query: 185 tcttcccttgattatctttcccctaaa-cttgcatcccttccttggccaattcttacaca 243
           ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct: 369 tcttcccttgattatctttcccctaaatct-gcatcccttccttggccaattcttataca 427

                                                                       
Query: 244 ctctacagttctcagcttagacaatacttattctaggagacagtctggacagctgcccct 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 428 ctctacagttctcagcttagacaatacttattctaggagacattctggacagctgcccct 487

                                                                       
Query: 304 ccccacagaactgagaagacatgcatggaagccttgaagatgaccttcactgtctgccta 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 488 ccccacagaactgagaagacatgcatggaagccctgaagatgaccttcactgtctgccta 547

                                                                       
Query: 364 cacacttgaatcatacctaggataattcttaaggtcggagactagattttgctca----- 418
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
Sbjct: 548 cacacttgaatcatacctaggataattcttaaggttggagactagattttgctcatgtcc 607

                                                                       
Query: 419 -----------ggactactcctgggcctggtacagtgagtgcttgttaatcatagattac 467
                      |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 608 atacttccggaggactactcctgggcctggtacagtgagtgctggttaatcgtagattac 667

                                                                       
Query: 468 aaacccaattcaaaccacccaaaggacaagtgtccaaggcagtatcccttcaaggtcatt 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaacccaattcaaaccacccaaaggacaagtgtccaaggcagtatcccttcaaggtcatt 727

                                                                       
Query: 528 taggatatcacagaattagattcagatgacttaatcactacacaacttggggctaggaag 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 taggatatcacagaattagattcagatgacttaatcactacacaacttggggctaggaag 787

                                                                       
Query: 588 atagctctgaaggtagggacaagggatccacacagcaaactggatgaggaacctagccat 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 atagctctgaaggtagggacaagggatccacacagcaaactggatgaggaacctagccat 847

                                                           
Query: 648 gtatgggagctctgagtttggccaagagctgatatctcagtggatgaa 695
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gtatgggagctctgagtttggccaagagctgatatctcagtggatgaa 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_c07.g1 MSMg01no505_c07.g1 CHROMAT_FILE:
MSMg01no505_c07.g1 PHD_FILE: MSMg01no505_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
         (610 letters)



>mm_chr11_103827253_103828262
          Length = 1010

 Score = 1156 bits (598), Expect = 0.0
 Identities = 604/606 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcctcaataaaatggcgactggctgggggcgggaacagcaaccaaccaatcatccgccgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gcctcaataaaatggcgactggctgggggcgggaacagcaaccaaccaatcatccgccgc 751

                                                                       
Query: 65  ctcctgggtactcttgcgcctatgtccgcgaagttacttgaatgacaaaaaatctgacca 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ctcctgggaactcttgcgcctatgtccgcgaagttacttgaatgacaaaaaatctgacca 691

                                                                       
Query: 125 atggaaatggcaataaggctggacgggagtaggtccgccccaccgcgacctaggcgacgg 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 690 atggaaatggcaataaggctggacgggagtaggtccgcccccccgcgacctaggcgacgg 631

                                                                       
Query: 185 taccacgctctggaaatgccggtttcatcttccaatgggagctcaccgcattcgggagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 taccacgctctggaaatgccggtttcatcttccaatgggagctcaccgcattcgggagag 571

                                                                       
Query: 245 acgcgcccacatgccccacccgaagccacagacgaccaatcagaaaagcaaaagggtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acgcgcccacatgccccacccgaagccacagacgaccaatcagaaaagcaaaagggtttt 511

                                                                       
Query: 305 ctatttgccctgccaatcaactctggtacttttcacggattgaactaacccggggagcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctatttgccctgccaatcaactctggtacttttcacggattgaactaacccggggagcat 451

                                                                       
Query: 365 tctgaccaacccaacgctggtatgtgggaggagccaggttcagagagatatttaaggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctgaccaacccaacgctggtatgtgggaggagccaggttcagagagatatttaaggaaa 391

                                                                       
Query: 425 tttgctgtggttgagctaaaagtagaaactggtttgggagcacagttcctggtcagaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttgctgtggttgagctaaaagtagaaactggtttgggagcacagttcctggtcagaaat 331

                                                                       
Query: 485 acccagattccaacatcgaaattaggcataaagaagatttcctatttggtatggagttag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acccagattccaacatcgaaattaggcataaagaagatttcctatttggtatggagttag 271

                                                                       
Query: 545 actgcggctgttcttgtatacaaactttcaacattagggagaaatataatcaccagtacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 actgcggctgttcttgtatacaaactttcaacattagggagaaatataatcaccagtacc 211

                 
Query: 605 ttagca 610
           ||||||
Sbjct: 210 ttagca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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