BAC Information

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BAC

Clone NameMSMg01-505E07
Chromosome11 (Build37)
Map Location 60,880,323 - 60,880,880
singlet/doubletsinglet
Overlap geneKcnj12
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3
Downstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505E07.T7 (MSMg01no505_e07.b1)MSMg01-505E07.TJ (MSMg01no505_e07.g1)
ACCAG579949AG579950
length759796
length of high quality
(start - end)
558 (69 - 626)198 (80 - 277)
definitionCHROMAT_FILE: MSMg01no505_e07.b1 PHD_FILE: MSMg01no505_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:08 2005CHROMAT_FILE: MSMg01no505_e07.g1 PHD_FILE: MSMg01no505_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATCTGGACAGCACAGTTCCTGGCCACATCTACATCAG
AGGTTCAGAGGGACATGGCCTGCAGACTCTGCCACCAACAGAGGCATGGG
TGGAGACCAGTAGACCAGACAGCTCAGGAAGGATTCCCAGGGTCTATGTC
ATGAGCCATAGTGCTACTGCCTGGCAGACACAGACACAGCTATGAAGCTT
GAGAGCCACAGAAAGAGTTCGTCAGGCATGGGGCAAAACAGCCAAGAGCC
TCAAGACATCCTTTAATGGCCAAGGAGGGTTTTTAAAGGGTAAAGGTACT
CCCAACCAAGACATACGGGTTCCAACAGGAGAGTCGAGATCTAACCCTCA
TGTCTAATGCAAGGTATCCTACCACGGAACCTCAGGCCCTACAGGGCCAC
CTGTCCTCACTTTCTCTCCTACAGCTGTTTCCGTCGATCACCTCACCATG
GGCTTGTTTAGCTGAGGCTCGGGGCTGTAATGGTGGATGCTGTTTCTGTC
TAGGCCAGGAGGCAGAGGGTAGACGGGGCTGGGGAACCCGGGGAGCATTC
TGAGAAGACATCTCAGCCCCGGGTTCCTGAGCCTTCCAGGGGAAGGTGGC
CAAGGTTGGGGTACTCAGACGCCGGGGGGAAGCTGCCAGGTCCCGGGAGC
CAGGCTTGTGTGGCCTAGAGGCCTTGAGAGATGTCCAGCGGGTCATGGTG
GCTCTGGCT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGAGAACAGGCTGGCCT
CAAACTCACAAGAGATCTACCTGCCTCTGCCTCCAGGGTACTTTGGAATA
CAGGTACGTGCTACCACACCAGCCCCCCCCCCCTTAAGAAAGATTCACCT
TGTGGTTTTTTTTTTTTTTTTTTGGTTTGGTTTGGTTTTTTGTTTGTTTG
TTTGTTTGGTTTTTTGGNTTTTTGAAANAAGATTTCTTTGTATAAATNTG
GAGGACCGGGAACACGCTTTTTAGTGGTTTTGGGGGNAGANGAAGGAAGA
AGGNGGNGAGTTTTTTTCCACCCCTCTTATTAAATGAGTGCGACACTACT
GTCATTGTAGTTTTTGCTCCCATTTTTTATTTTTTTGTGTGTTTGGCCTG
TTTTACTTTCATGTGTTTTTTGGTGCATTTGGCTTTGCCGGAGAATGCTT
GGTTTGTGTACTAGTTATTTGTAGGCATTTCGTTACATTTGTAATTTTTT
TGCGGTTGATCCGTTTATGAATGATAATTGCAGGCTTCTTTGTTATTTTG
TTTTGCAGCTTTTATTGTTAGGTACGCCATCCTTAAGTCCTGGTCGTAGT
TTATCTTGAAGGCAAAGCGCGTGATGTCTTTTTTTATTTTTTGAGACGGG
TTCGTCATACCTTTTAAAGTAGCGAAATAATTGACACTGTACTCATATGT
CATTCAGTTTACCTTATGGAAGGTATCGACACATTGATCATTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_e07.b1 MSMg01no505_e07.b1 CHROMAT_FILE:
MSMg01no505_e07.b1 PHD_FILE: MSMg01no505_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:08 2005
         (558 letters)



>mm_chr11_60880123_60881080
          Length = 958

 Score = 1033 bits (534), Expect = 0.0
 Identities = 552/558 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagcacagttcctggccacatctacatcagaggttcagagggacatggcctgcagact 60
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gacagcacaatccctggccacatctacatcagaggttcagagggacatggcctgcagact 699

                                                                       
Query: 61  ctgccaccaacagaggcatgggtggagaccagtagaccagacagctcaggaaggattccc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctgccaccgacagaggcatgggtggagaccagtagaccagacagctcaggaaggattccc 639

                                                                       
Query: 121 agggtctatgtcatgagccatagtgctactgcctggcagacacagacacagctatgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agggtctatgtcatgagccatagtgctactgcctggcagacacagacacagctatgaagc 579

                                                                       
Query: 181 ttgagagccacagaaagagttcgtcaggcatggggcaaaacagccaagagcctcaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttgagagccacagaaagagttcgtcaggcatggggcaaaacagccaagagcctcaagaca 519

                                                                       
Query: 241 tcctttaatggccaaggagggtttttaaagggtaaaggtactcccaaccaagacatacgg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcctttaacggccaaggagggtttttaaagggtaaaggtactcccaaccaagacatacgg 459

                                                                       
Query: 301 gttccaacaggagagtcgagatctaaccctcatgtctaatgcaaggtatcctaccacgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gttccaacaggagagtcgagatctaaccctcatgtctaatgcaaggtatcctaccacgga 399

                                                                       
Query: 361 acctcaggccctacagggccacctgtcctcactttctctcctacagctgtttccgtcgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acctcaggccctacagggccacctgtcctcactttctctcctacagctgtttccgtcgat 339

                                                                       
Query: 421 cacctcaccatgggcttgtttagctgaggctcggggctgtaatggtggatgctgtttctg 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 338 cacctcaccatgggcttgtttagctgaggcttggggctgtaatggtggatgctgtttctg 279

                                                                       
Query: 481 tctaggccaggaggcagagggtagacggggctggggaacccggggagcattctgagaaga 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctaggccaggaggcagagggttgacggggctggggaacccggggagcattctgagaaga 219

                             
Query: 541 catctcagccccgggttc 558
           ||||||||||||||||||
Sbjct: 218 catctcagccccgggttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)