Query= MSMg01no505_g01.b1 MSMg01no505_g01.b1 CHROMAT_FILE:
MSMg01no505_g01.b1 PHD_FILE: MSMg01no505_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:16 2005
(644 letters)
>mm_chr11_39434199_39435245
Length = 1047
Score = 1205 bits (623), Expect = 0.0
Identities = 637/643 (99%), Gaps = 3/643 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgtttcttttaaaaatattttattttgtaattttatttattttacctgaatg 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgttacttttaaaaatattttattttgtaattttatttattttacctgaatg 264
Query: 65 tatatctgtgtaccacatgtgtgcatggtactcacagggactagaggagtgtactgaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatatctgtgtaccacatgtgtgcatggtactcacagggactagaggagtgtactgaatc 324
Query: 125 ccctgggactagagttatcattggttgtgagccaccatatgagtgttaggaatcagaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgggactagagttatcattggttgtgagccaccatatgagtgttaggaatcagaccc 384
Query: 185 ctgtcctctgtaagaggaacaaattctcttaaccactgagccatctctccaggacccaga 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtcctctgtaagaggaacaaatgctcttaaccactgagccatctctccaggacccaga 444
Query: 245 gtgttatttttaacagttagatacattgagcctcatattctgcaaaatatctatacaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgttatttttaacagttagatacattgagcctcatattctgcaaaatatctatacaaca 504
Query: 305 gtatgcaaaacaattttagcagaatccttaaactgagtatgtatcttaccatataattaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatgcaaaacaattttagcagaatccttaaactgagtatgtatcttaccatataattaa 564
Query: 365 ctggatccttttttttttttttttttt---ggaaattggactaccctaaaatcgtatgat 421
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 565 ctggatccttttttttttttttttttttttggaaagtggactaccctaaaatcgtatgat 624
Query: 422 gggcacctgtcttctacctccatggctcccttctttatcatatactaagtttgtgtcttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggcacctgtcttctacctccatggctcccttctttatcatatactaagtttgtgtcttt 684
Query: 482 ccacatctcatccatgatacacagacaacaagatggatatttgagcaaaagaaggtctcc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacatctcatccatgatacacagacaacaagatggatatttgagcaaaagaaggtctcc 744
Query: 542 atgggtcaaaagctttgtcctatttgatactgctttcaggctcattcctgaaaccccaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgggtcaaaagctttgtcctatttgatactgctttcaggctcattcctgaaaccccaga 804
Query: 602 tcaaaagaacagatgagttttagttctctataaagaactatgc 644
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaaaagaacagatgagttttagttctctataaagaactatgc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1047
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1037
Effective search space: 657458
Effective search space used: 657458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_g01.g1 MSMg01no505_g01.g1 CHROMAT_FILE:
MSMg01no505_g01.g1 PHD_FILE: MSMg01no505_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:16 2005
(676 letters)
>mm_chr11_39570900_39571975
Length = 1076
Score = 1284 bits (664), Expect = 0.0
Identities = 673/676 (99%)
Strand = Plus / Minus
Query: 1 atgtttccagggtgttagtcaccattctaaaattagacaaatcttctttccttctcatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 atgtttccagggtgttagtcaccattctaaaattagacaaatcttctttccttctcatag 646
Query: 61 catccttctcatcacacagcatcagaggaggatggtacagattaagatagtgagaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 catccttctcatcacacagcatcagaggaggatggtacagattaagatagtgagaggcag 586
Query: 121 agcagagcagaggagtctggaatcctggacaattgtgtaagacggcacagaaggttagga 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 585 agcagagcagaggagtctggaatcctggacaattgtgtaagacgtcacagaaggttagga 526
Query: 181 aatcataaaggagcaagcatggtgagctaggagatcaccttcagttgttagcttctattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aatcataaaggagcaagcatggtgagctaggagatcaccttcagttgttagcttctattg 466
Query: 241 ggtcatggtgccttgagttttctttagtgaatgagggacaaatgtttattactaggccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggtcatggtgccttgagttttctttagtgaatgagggacaaatgtttattactaggccac 406
Query: 301 tctaatggcatttctctaaaatcttgtacaactgaacaagaaagagcaagtgccccaaac 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tctgatggcatttctctaaaatcttgtacaactgaacaagaaagagcaagtgccccaaac 346
Query: 361 ttattgattctatttagacagataaatggaggaaacaacacagtagtcattcactcaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttattgattctatttagacagataaatggaggaaacaacacagtagtcattcactcaata 286
Query: 421 tcttctgccccagacattttgatcaaattacaccaatactttataagccaatcgatattt 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 285 tcttctgccccagacattttgatcaaattataccaatactttataagccaatcgatattt 226
Query: 481 atggctctgctttatggacaactactgtactagctggctttgtatacccacttgacacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atggctctgctttatggacaactactgtactagctggctttgtatacccacttgacacca 166
Query: 541 gctagaagcattagagaggaaggaggctcagttgaagaaatatctccatgaaatccaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gctagaagcattagagaggaaggaggctcagttgaagaaatatctccatgaaatccaggt 106
Query: 601 atacagcattttctcaattaggaatcaatgggtgaagggcctacccctattgtgggtgga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 atacagcattttctcaattaggaatcaatgggtgaagggcctacccctattgtgggtgga 46
Query: 661 gtcatccctgggctgg 676
||||||||||||||||
Sbjct: 45 gtcatccctgggctgg 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
