Query= MSMg01no506_m22.b1 MSMg01no506_m22.b1 CHROMAT_FILE:
MSMg01no506_m22.b1 PHD_FILE: MSMg01no506_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:08 2005
(622 letters)
>mm_chr11_54620868_54621889
Length = 1022
Score = 1125 bits (582), Expect = 0.0
Identities = 609/618 (98%)
Strand = Plus / Plus
Query: 5 gaattcctgggcctcttccctctgcctgctaaatgctgggattataggtgtgtgccacca 64
||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 205 gaattcctgggcctcctgcctctgcctgctaaatgctgggattataagtgtgtgtcacca 264
Query: 65 ggccaggctttaggcttatctaaaacatactttgacagctttaaaggctcatcaggaaat 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ggccaggctttaggcttatctaaaacatagtttgacagctttaaaggctcatcaggaaat 324
Query: 125 agcactgagctcataaaaagtagttacagtcacactaatttcagatgaagagttatggca 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 agcactgagctcataaaaagtagttacagtcacactaatttcagacgaagagttatggca 384
Query: 185 gcgagcgttcaacatggcgatgtggggcacttcctactgaggacggtggttacagaaggg 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 gcgagcgttcaacatggcgatgtggggcacttcctactgaggatggtggttacagaaggg 444
Query: 245 ttgaatgcaaaggggaatatgtctggtagcctggcacacggcctcaccacagtcttcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaatgcaaaggggaatatgtctggtagcctggcacacggcctcaccacagtcttcatt 504
Query: 305 acataagcaataacaaccggcccccacatccttgttcacacccagatgagttaaagtgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acataagcaataacaaccggcccccacatccttgttcacacccagatgagttaaagtgaa 564
Query: 365 agaggaaccatcatagcatctagataaaatattactggggtgggggagggaataattacc 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 agaggaaccatcatagcatctagataaaatattactcgggtgggggagggaataattacc 624
Query: 425 taattaatacagggaaaaaaaagggccagcaacacggcttgcaacatggctcaaagtgct 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taattaatacaggggaaaaaaagggccagcaacacggcttgcaacatggctcaaagtgct 684
Query: 485 tggtgtcttgctgccgtgcctgatgacctaagtttgagtcccagactcaaatagtgtaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggtgtcttgctgccgtgcctgatgacctaagtttgagtcccagactcaaatagtgtaag 744
Query: 545 agaaatctaacttcagcaagttgtcttctgacctctacacatgcatgaatcctgacatac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaaatctaacttcagcaagttgtcttctgacctctacacatgcatgaatcctgacatac 804
Query: 605 tacacacacacacacaca 622
||||||||||||||||||
Sbjct: 805 tacacacacacacacaca 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_m22.g1 MSMg01no506_m22.g1 CHROMAT_FILE:
MSMg01no506_m22.g1 PHD_FILE: MSMg01no506_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:08 2005
(659 letters)
>mm_chr11_54779767_54780825
Length = 1059
Score = 1187 bits (614), Expect = 0.0
Identities = 645/660 (97%), Gaps = 10/660 (1%)
Strand = Plus / Minus
Query: 1 tttttcacagaggcacatgaaataattcatttaaaagagtctaaaagccagacgtggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tttttcacagaggcacatgaaataattcatttaaaagagtctaaaagccagacgtggtgg 924
Query: 61 cgcatgcttttaatctcagcactcgggaggcagaggcaggt-atatctctgagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 923 cgcatgcttttaatctcagcactcgggaggcagaggcaggtga-atctctgagttcaaga 865
Query: 120 ccagcctggtctacagagtgagtttcaggacagccagggctacacagagaaaccctgtct 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 864 ccagcctggtctacagagtgagttttaggacagccagggctacacagagaaaccctgtct 805
Query: 180 caaaaaaaccaaaaaaaaaaaaaaaaaaaagtctaaatctggatatggtggcacttgcct 239
||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaaaaaac--------aaaaaacaaaaaagtctaaatctggatatggtggcacttgcct 753
Query: 240 gtaatcccagctcttatgaggtggactaagaagatcaggagccaaggctatccttggcac 299
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtaatcctagctcttaggaggtggactaagaagatcaggagccaaggctatccttggcac 693
Query: 300 atagggagttgaaggtcagcctggactaggtgagactctattgagtgggggaaggagcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atagggagttgaaggtcagcctggactaggtgagactctattgagtgggggaaggagcca 633
Query: 360 ctagtgatagtgtctccatcttgctttttcaatttctttacattttcagatgtccttggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctagtgatagtgtctccatcttgctttttcaatttctttacattttcagatgtccttggg 573
Query: 420 tgtctgagtagaatgcccctccatttgtgggtatccagcctgattcctacacgttataga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtctgagtagaatgcccctccatttgtgggtatccagcctgattcctacacgttataga 513
Query: 480 aaagaaaagctgaggacccaagaggggaagggacttgcctagggccacatgtcaaagcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaagaaaagctgaggacccaagaggggaagggacttgcctagggccacatgtcaaagcca 453
Query: 540 ggattcaaactcagctcttctgatcctcaacccaagcacagcctgaaaggggcggggcaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggattcaaactcagctcttctgatcctcaacccaagcacagcctgaaaggggcggggcaa 393
Query: 600 ttcaggctggaaagagggaagcggtgtgggtagagattgggaagctgaccggcatgtcag 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 392 ttcaggctggaaagagggaagcggtgtgggtagagattggggagctgaccggcatgtcag 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
