Query= MSMg01no506_p24.b1 MSMg01no506_p24.b1 CHROMAT_FILE:
MSMg01no506_p24.b1 PHD_FILE: MSMg01no506_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:23 2005
(506 letters)
>mm_chr11_71853466_71854371
Length = 906
Score = 872 bits (451), Expect = 0.0
Identities = 489/509 (96%), Gaps = 14/509 (2%)
Strand = Plus / Plus
Query: 10 cccacactttgtattccgtcttcatagaaagcactctcctcctccctctgattcactgca 69
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cccacactttgaattccgtcttcatagaaagcactctcctcctccctctgattcactgca 269
Query: 70 agtatctcctgattgtgatcacaaacacgagtggcctaacacaagcaggttgagaagcac 129
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 270 agtatctcctgattgtgatcacaaacacaagtggcctaacacaagcaggttgagaagcac 329
Query: 130 acatttctgattcctggtaaacaatcccatggaggagagaggggctgggggacaaaatca 189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gcatttctgattcctggtaaacaatcccatggaggagagaggggctgggggacaaaatca 389
Query: 190 tcaagcaaaagagagctcataggctctcgaacctcagcctatatccactgtcacccaagg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcaagcaaaagagagctcataggctctcgaacctcagcctatatccactgtcacccaagg 449
Query: 250 tgacagcaatggagtttctctgagcacatcaaacagtcacagtagttcagggagatttgt 309
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgacagcaatagagtttctctgagcacatcaaacagtcacagtagttcagggagatttgt 509
Query: 310 ttggggttgtgtgtgtgtgagagagagagacagagagagacagagaga--gacagaga-- 365
||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct: 510 ttggggttgtgtgtgtgtgtgagagagagacagagagagacagagagacagagagagaca 569
Query: 366 gacagagagagaaagacagagacagagagagacagacagagacaga----------caga 415
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 570 gacagagagagaaagacagagacagagagagacagacagagacagagagagacagacaga 629
Query: 416 gagagagacagagacagagagagagagacagagagagagacagagagagagagaggggag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagacagagacagagagagagagacagagagagagacagagagagagagaggggag 689
Query: 476 tgtttgtgtgtgtgtgtgtgtgtgtgtgt 504
|||||||||||||||||||||||||||||
Sbjct: 690 tgtttgtgtgtgtgtgtgtgtgtgtgtgt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_p24.g1 MSMg01no506_p24.g1 CHROMAT_FILE:
MSMg01no506_p24.g1 PHD_FILE: MSMg01no506_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:23 2005
(587 letters)
>mm_chr11_71981508_71982494
Length = 987
Score = 1118 bits (578), Expect = 0.0
Identities = 584/586 (99%)
Strand = Plus / Minus
Query: 1 ttcggtggaagcaaatagtcatttgaaggatcatccgtcacggcacgcagcagcagcagc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 786 ttcggtggaagcaaatagtcatttgaaggatcgtccgtcacggcacgcagcagcagcagc 727
Query: 61 ccagcctgccgagcaggtgtgtgtggtgtgtggttggtctgctgcttttatcacatgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccagcctgccgagcaggtgtgtgtggtgtgtggttggtctgctgcttttatcacatgata 667
Query: 121 acgtctccagtgaaaggaaaatgatatgcagattactttgcaaacactacattatcctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acgtctccagtgaaaggaaaatgatatgcagattactttgcaaacactacattatcctac 607
Query: 181 tcaaggagcgggaagttattctccttatgcagcatgttagttcttagagtgtgtatttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcaaggagcgggaagttattctccttatgcagcatgttagttcttagagtgtgtatttag 547
Query: 241 ttctgagtctggaccagccatgcaaacagctggcagacatctctagagtcacaggtttct 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttctgggtctggaccagccatgcaaacagctggcagacatctctagagtcacaggtttct 487
Query: 301 gctggggtactgttagctcttcccctcagggcagagtgtagataaactgtggcctgactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gctggggtactgttagctcttcccctcagggcagagtgtagataaactgtggcctgactg 427
Query: 361 tggacggcctgcagcaggagaatcgctgccctcctttcctgtcatccagcctactttggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggacggcctgcagcaggagaatcgctgccctcctttcctgtcatccagcctactttggc 367
Query: 421 tcagtactggcctaatttcctttctctgaaaggcctgatgttcttgttaggcaagcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcagtactggcctaatttcctttctctgaaaggcctgatgttcttgttaggcaagcaggt 307
Query: 481 tttgtgtttggcccagcagagaggaaagaaggtccaagaaagaaatgagaaaaataaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttgtgtttggcccagcagagaggaaagaaggtccaagaaagaaatgagaaaaataaata 247
Query: 541 cctcttttgttgtccaggctaatatttctctgcaggatttgctttt 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctcttttgttgtccaggctaatatttctctgcaggatttgctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
