Query= MSMg01no507_b03.b1 MSMg01no507_b03.b1 CHROMAT_FILE:
MSMg01no507_b03.b1 PHD_FILE: MSMg01no507_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:29 2005
(691 letters)
>mm_chr11_42909567_42910655
Length = 1089
Score = 1216 bits (629), Expect = 0.0
Identities = 666/681 (97%), Gaps = 8/681 (1%)
Strand = Plus / Plus
Query: 14 gaattctagagtggttgtatctcacgacttagttcatccaagacaaaaatctgcgccatg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattctagagtggttgtatctcacgacttagttcatccaagacaaaaatctgcgccatg 273
Query: 74 taacatggggttacactcactgttcctcctcaggagcatgtgcctgcacacagtacacgt 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 taacatggggttacactcactgttcctcctcaggagcatgtgcctgcacacagtacacgt 333
Query: 134 acagacatccagacttctcttcaagccttatgaagctccagagtaaacatgtgaagtaag 193
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 334 acagacatccagacttctcttcaagccttatgaagctccagagtgaacatgtgaagtaag 393
Query: 194 atggaccattgtgaccagtagcaaaaagttttcaagatt--ataca-atcttgcactaga 250
||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 394 atggaccattgtgaccagtagcaaaaagttttcaagattgtata-aga----gcactaga 448
Query: 251 taattgaaaaatagtcctttgggctgttagatatctaacagatagtaggataaattctca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taattgaaaaatagtcctttgggctgttagatatctaacagatagtaggataaattctca 508
Query: 311 tatcttgctcattaaagaaaaagagacattttccctctctatgaaagaaagtgaaagaac 370
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 509 tatcttgctcattaaagaaaaagagacatttttcctctctatgaaagaaagtgaaagaac 568
Query: 371 tagaccattatcagttaccatggcaactgaaattcactacatgcttagttcatcctgtca 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tagaccattatcagttaccatggcaactgaaattcactacatgcttagttcatcctgtca 628
Query: 431 ctattgaagacatgagtgaggaaaaagtaaaactaagcttttcggggttttttgtttttg 490
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctattgaagacatgagggaggaaaaagtaaaactaagcttttcggggttttttgtttttg 688
Query: 491 tcaaatatttaaaagtgacagttcatggcatgaccctaaaacacctttataagagtgaaa 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcaaatatttaaaagtgacagttcatggcatgaccctaaaacacctttataagagtgaaa 748
Query: 551 ggaagacaggataacatgagagaggaggataaagggacagcacttggcctaaaacattca 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaagacaggataacatgagagaggaggataaagggacagcacttggcctaaaacattca 808
Query: 611 aataagaatatttcagatgaaccagttgtggctgacggggtcgatgccaagcaaattgaa 670
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 809 aataagaatgtttcagatgaaccaattgtggctgacggggtcgatgtcaagcaaattgaa 868
Query: 671 ggaaagaaaggaaaacaataa 691
|||||||||||||| ||||||
Sbjct: 869 ggaaagaaaggaaagcaataa 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1089
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1079
Effective search space: 734799
Effective search space used: 734799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_b03.g1 MSMg01no507_b03.g1 CHROMAT_FILE:
MSMg01no507_b03.g1 PHD_FILE: MSMg01no507_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:29 2005
(656 letters)
>mm_chr11_43082842_43083897
Length = 1056
Score = 1232 bits (637), Expect = 0.0
Identities = 651/656 (99%)
Strand = Plus / Minus
Query: 1 tcaaaaagtagcagggaggtacataggggttccagaagctacttgccccactaattattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tcaaaaagtagcagggaggtacataggggttccagaagctacttgccccactaattattt 797
Query: 61 cgaacactccaataatggaatactcatgcctctagtgattcccaacacacagttacgacc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cgaacactccaagaatggaatactcatgcctctagtgattcccaacacacagttacgacc 737
Query: 121 agcctgccttgcacagttatccccctgaccccagcattagtcgtgtgtcgcatgtgaagg 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agcctgccttacacagttatccccctgaccccagcattagtcgtgtgtcgcatgtgaagg 677
Query: 181 atagagatttgcttatgaacatactgaggtgatttccatatattcccacccctggcaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 676 atagagatttgcttatgaacatactgaggtgatttccatatattcccacccctagcaatc 617
Query: 241 ttttaaattatggatactaaattatgtcctacagatttagctgaccaatagacacatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttttaaattatggatactaaattatgtcctacagatttagctgaccaatagacacatgac 557
Query: 301 taattgtttctttccatttgaaatgtgagcctcctggtgggctgtatgttttggtgcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taattgtttctttccatttgaaatgtgagcctcctggtgggctgtatgttttggtgcaat 497
Query: 361 tatatcagccccaggccagagctgggccattttagccacctgaagagtgtgctaattgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tatatcagccccaggccagagctgggccattttagccacctgaagagtgtgctaattgtc 437
Query: 421 ctgaagtatactgcctgatgtgtgtctcattgctgtagtggttttaatgggaatttctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctgaagtatactgcctgatgtgtgtctcattgctgtagtggttttaatgggaatttctaa 377
Query: 481 ttaaaaataagaagagagtcagggttggatgccttcctcctgcattacagttcaggcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttaaaaataagaagagagtcagggttggatgccttcctcctgcattacagttcaggcaga 317
Query: 541 gcccccttgagcatgctcatgtgatcaagcccatgaggggaggcagctagggcagagact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcccccttgagcatgctcatgtgatcaagcccatgaggggaggcagctagggcagagact 257
Query: 601 agcgtgtgtctggtttgtctagtangtacagctcgggctgttggagctctcattag 656
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 256 agcgtgtgtctggtttgtctagtaggtacagctcaggctgttggagctctcattag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
