Query= MSMg01no507_c23.b1 MSMg01no507_c23.b1 CHROMAT_FILE:
MSMg01no507_c23.b1 PHD_FILE: MSMg01no507_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
(620 letters)
>mm_chr11_93245141_93246160
Length = 1020
Score = 1036 bits (536), Expect = 0.0
Identities = 574/592 (96%), Gaps = 9/592 (1%)
Strand = Plus / Minus
Query: 5 gaattcttctcccaatcctctgataactctttataacttcattcctactccttatctacc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaattcttctcccaagcctctgataactctttataacttcattcctactccttatctacc 533
Query: 65 tcttttctctgacagattaaaaagtgggcttctttctttcatggggctcatggtcataaa 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcctttctctgacagattaaaaagtgggcttctttctttcatggggctcatggtcataaa 473
Query: 125 ggcccattattccgagatgtaaagattctaaataaagagcgactgccactctcacaaaat 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 472 ggcccattattccgagatgtaaagattctaaataaagagtgactgccactctcacaaaat 413
Query: 185 gaaatttattggttttattactctggatatttccaaaatgatcagaggcttctctggtcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaatttattggttttattactctggatatttccaaaatgatcagaggcttctctggtcc 353
Query: 245 cacagccatactcagggaggtgggccccaggcttgatattctacccagtaggctttagaa 304
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 352 cacagccatactcagggaggtgggccccaggcttgatagtctagccagtaggctttagaa 293
Query: 305 gatgctcaggggagcatctatgtgtgcaagcattccatggcttcctggctggtacctctg 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gatgcacaggggagcatctatgtgtgcaagcattccatggcttcctggctggtacctctg 233
Query: 365 aggctgcatgcaatggttgcttccata---------gtaagaacagaaaggagggtgaat 415
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 232 aggctgcatgcaatggttgcttccatagctgaatatgtaagaacagaaaggagggtgaat 173
Query: 416 attactgaaagtggagcagagtagataaaactcatgtttacagaggcaggtactggctac 475
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 172 attactgagggtggagcagagaagataaaactcatgtttacagaggcaggtactggctac 113
Query: 476 tgcttgattaacacagctatattagatattctctatatactgcatacagaataggaggtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgcttgattaacacagctatattagatattctctatatactgcatacagaataggaggtc 53
Query: 536 ctaggtgggcaaggaaggataatataagggttgagcattatctcttagggga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ctaggtgggcaaggaaggataatataagggttgagcattatctcttagggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_c23.g1 MSMg01no507_c23.g1 CHROMAT_FILE:
MSMg01no507_c23.g1 PHD_FILE: MSMg01no507_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
(568 letters)
>mm_chr11_93077753_93078719
Length = 967
Score = 774 bits (400), Expect = 0.0
Identities = 463/484 (95%), Gaps = 2/484 (0%)
Strand = Plus / Plus
Query: 1 ttgatttgtataggcaatatttttccctcccattctaagaatacccacacagatcacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttgatttgtataggcaatatttttccctcccattctaagaatacccacacagattacctc 260
Query: 61 cttctcaaattgacctcttcatttttctctttgatgtctgccctcttgatcccctgcttt 120
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cttctcaaattgacctcttca-ttttctctttgatgtctgccctcctgatcccctgcttt 319
Query: 121 gctatctcccttcattgtaatgcagacacttgggaactgcattcttctgcctagattctc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 gctatctcccttcattgtaatgcagacacttgggaactgcattcttcagcctagattctc 379
Query: 181 tcctataggttccttgtgtttgcattagaaggtaccattggagctgcccagtggctgtgg 240
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 tcctatgggttccttgtgtttgcattagaaggtaccattggggctgcccagtggctgtgg 439
Query: 241 ctcagtttttagtgctctccaagcaggaagggaacagctctgagaacaagaaccagagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcagtttttagtgctctccaagcaggaagggaacagctctgagaacaagaaccagagat 499
Query: 301 ccatgaatgaaacatgttagtaatctcagtgcttcagatatagagcaggaaggtcatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccatgaatgaaacatgttagtaatctcagtgcttcagatatagagcaggaaggtcatttt 559
Query: 361 tctttggctaaatagttacttgtctcaccaaacaaagataaagggaaagaaagaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctttggctaaatagttacttgtctcaccaaacaaagataaagggaaagaaagaaagaaa 619
Query: 421 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 480
|| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| | ||||| |
Sbjct: 620 gagagagagagagagagagagagagagagagagagagagagagagagagaga-aaagata 678
Query: 481 gaaa 484
||||
Sbjct: 679 gaaa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
