Query= MSMg01no507_d02.b1 MSMg01no507_d02.b1 CHROMAT_FILE:
MSMg01no507_d02.b1 PHD_FILE: MSMg01no507_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
(690 letters)
>mm_chr11_37968795_37969885
Length = 1091
Score = 1280 bits (662), Expect = 0.0
Identities = 674/678 (99%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 14 gaattctttattaagcctt-ggttgttcagaacctaagagctaggttaagggcagaatgg 72
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattctttattaagcctttggttgttcagaacctaagagctaggttaagggcagaatgg 273
Query: 73 ggattggatcctttatcagagaaattaaatacttagaattaactcagattattatgtgag 132
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggattggatccttcatcagagaaattaaatacttagaattaactcagattattatgtgag 333
Query: 133 ttgtattattttaaagttatgtatttgggtcccatccaggaaaataagtattctaatttc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttgtattattttaaagttatgtatttgggtcccatccaggaaaataagtattctaatttc 393
Query: 193 cagtctgtgaaataaatccttgtctttggtaattactgccttttgtttacatcatttgct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagtctgtgaaataaatccttgtctttggtaattactgccttttgtttacatcatttgct 453
Query: 253 catgtgtgtgtctacatgtgtaagaagagaggatgaacaacactgagagagagaatgtca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 catgtgtgtgtctacatgtgtaagaagagaggatgaacaacactgagagagagaatgtca 513
Query: 313 taactaatgtatagaaggaattctattcatgtgaactcggcaatgctgtgtcatgtcagg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taactaatgtatagaaggaattctattcatgtgaactcggcaatgctgtgtcatgtcagg 573
Query: 373 agcatgtccacaaatagcttcaagttgatagggagtacttgaattgcaagtggcttcacc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agcatgtccacaaatagcttcaagttgatagggagtacttgaattgcaagtggcttcacc 633
Query: 433 attctgacagaagtcccccagagcaaagcaagtaatggcagtgtgctgcacaagacatgg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attctgacagaagtcccccagagcaaagcaagtaatggcagtgtgctgcacaagacatgg 693
Query: 493 gaggacttgagagtccttggcaaagaaggagcaggggtacgcacatgcacactcagcctt 552
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 694 gaggacttgagagtccttggcaaagaaggagcaggggtgcgcacatgcacactcagcctt 753
Query: 553 tacccagagccccagcactttatcaacctaaacttcatacagaggactcctgaccctgga 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tacccagagccccagcactttatcaacctaaacttcatacagaggactcctgaccctgga 813
Query: 613 gcctttaccaaatagaaaccattgagtttagttcccctaactcattatcatatctttata 672
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 814 gcctttaccaaatagaaaccattgagtttagttcccctaactcattatcatgtctttata 873
Query: 673 agtcacaattcttggatt 690
||||||||||||||||||
Sbjct: 874 agtcacaattcttggatt 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space: 735080
Effective search space used: 735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_d02.g1 MSMg01no507_d02.g1 CHROMAT_FILE:
MSMg01no507_d02.g1 PHD_FILE: MSMg01no507_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:38 2005
(626 letters)
>mm_chr11_38125783_38126808
Length = 1026
Score = 1151 bits (595), Expect = 0.0
Identities = 616/623 (98%), Gaps = 1/623 (0%)
Strand = Plus / Minus
Query: 4 caaacaataaaaaggtactctagagagttagatctgagatgttagacaatgtaaaaagta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaacaataaaaaggtactctagagagttagatctgagatgttagacaatgtaaaaagta 566
Query: 64 tatggactgtaaatctccctggaggggtggtaggtcagttggatctggaatgatgtgtac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatggactgtaaatctccctggaggggtggtaggtcagttggatctggaatgatgtgtac 506
Query: 124 catctagtgcatgaaaaagatggaattggacttgcatgagaaacagacaggcagaggcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catctagtgcatgaaaaagatggaattggacttgcatgagaaacagacaggcagaggcat 446
Query: 184 aaagaaagagaaagactccccctttttggccaaagatagaaaataggttatttcactaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaaagagaaagactccccctttttggccaaagatagaaaataggttatttcactaac 386
Query: 244 cactgtaaggtcagtagtaaaggaaacataggacacatgcaaaagaagggagaatgaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactgtaaggtcagtagtaaaggaaacataggacacatgcaaaagaagggagaatgaata 326
Query: 304 gaatttttattaaaagagtaggagtgactaagaggccatgggcttcacgaaatttatatc 363
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 aaatttttattaaaagagtaggagtgactaagaggccatgggcttcaggaaatttatatc 266
Query: 364 ttctcctttgcaagagatgatatgagaagagcaatgtgaggaagagctgaacataaaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ttctcctttgcaagagatgatatgagaagagcaatgtgaggaagagctgtacataaaagc 206
Query: 424 agcaggaaaatcttgctggcatatgcaatatgggtttggtagttgattatgggatggatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agcaggaaaatcttgctggcatatgcaatatgggtttggtagttgattatgggatggatc 146
Query: 484 cctggatggggcagcctctgcatggtccttccttctgtctcagctctgaactttgcctct 543
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 145 cctggat-gggcagcctctgcatggtccttccttccgtctcagctctgaactttgcctct 87
Query: 544 ctaactccttcaatggatattttgttccccattttaagaaagagctaagtatccacactt 603
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gtaactccttccatggatattttgttccccattttaagaaagagctaagtatccacactt 27
Query: 604 tggtctgccttcttcttgagttt 626
|||||||||||||||||||||||
Sbjct: 26 tggtctgccttcttcttgagttt 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
