Query= MSMg01no507_e01.b1 MSMg01no507_e01.b1 CHROMAT_FILE:
MSMg01no507_e01.b1 PHD_FILE: MSMg01no507_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:44 2005
(588 letters)
>mm_chr11_45147269_45148256
Length = 988
Score = 1073 bits (555), Expect = 0.0
Identities = 574/581 (98%), Gaps = 2/581 (0%)
Strand = Plus / Minus
Query: 5 gaattctgggggtctacttcttttcttgttttgtagactttactattgttaaaatttcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gaattctgggggtctacttcttttcttgttttgtagactttactattgttaaaatttcta 922
Query: 65 tacattatttacctagatcctc--aaaaaaaaaaaaatcacctagtggcttgttaaatag 122
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 921 tacattatttacctagatcctcaaaaaaaaaaaaaaatcacctagtggcttgttaaatag 862
Query: 123 gagattaggctccatccccggacattctatctaattcttctggtgttagagttacatatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gagattaggctccatccccggacattctatctaattcttctggtgttagagttacatatg 802
Query: 183 tgtattttaaataactccttggataattataataaaggtggcatattaacacacttcaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtattttaaataactccttggataattataataaaggtggcatattaacacacttcaag 742
Query: 243 aaacactatctgaagataggcaggttgaccaatggacaagagctctcggctgtgcaagca 302
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 aaacactatctgaagataggcaggttgaccaatggacaagagctcttggctgtgcaagca 682
Query: 303 tgtggaacccagttcaaagctccaggatgctgatgctccttcgaaagctcaaagtgctgt 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tgtggaacccagttcaaagctccaggatgctgatgctccttcaaaagctcaaagtgctgt 622
Query: 363 aggagcagtgatggcaggatttctgtggcttgctgactaccagatctagctctgggttta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagcagtgatggcaggatttctgtggcttgctgactaccagatctagctctgggttta 562
Query: 423 aggagagataccgtcctaacagaacaaagtgttgagtagggcacccaatatcttcctgtg 482
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 561 aggagagataccgtcctaacagaacaaagtcttgagtagggcacccaatatcttcccgtg 502
Query: 483 gtctccgtgcctgatgcaggcacacctaatcacatttacctatatacctacaacacacaa 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctccgtgcctgatgcaggcacacctaatcacatttacctatatacctacaacacacac 442
Query: 543 acacacacacacacacacacacacacacacacacacacaca 583
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacacacacacacacacacacacacacacacacaca 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_e01.g1 MSMg01no507_e01.g1 CHROMAT_FILE:
MSMg01no507_e01.g1 PHD_FILE: MSMg01no507_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:44 2005
(613 letters)
>mm_chr11_44996717_44997729
Length = 1013
Score = 1069 bits (553), Expect = 0.0
Identities = 598/613 (97%)
Strand = Plus / Plus
Query: 1 tcccttctaaagagaaattcttcatgaaatcttagtagcccatttctttgtttgcataat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tcccttctaaagagaaattcttcatgaaattttagtagcccatttctttgtttgcataat 260
Query: 61 acatttattaattatcctcaacccaccagaacaatctttacatgaaatcatttttctctt 120
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 261 acatttattaattatcctcaacccaccagaacaatctttacatgtagtcatttttctctt 320
Query: 121 ttattgtcctttgctttgggctactcattggctatcattacaccaacatatctctgtagt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattgccctttgctttgggctactcattggctatcattacaccaacatatctctgtagt 380
Query: 181 ttagagaatcccatgtacagctttccctgtgaaaagtagcgtggttgcagacacttactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagagaatcccatgtacagctttccctgtgaaaagtagcgtggttgcagacacttactt 440
Query: 241 gcatctttagattggtgctgtctgttgaccaggacaggaagaaagctgccctggtcacag 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatctttagattggtgctgtccgttgaccaggacaggaagaaagctgccctggtcacag 500
Query: 301 agctttagaagatgctacaccctgagatcttgtcctcaggtccataggaagtgtggtcat 360
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agctttagaagatgctccaccctgagatcttgtcctcaggtccataggaaatgtggtcat 560
Query: 361 ctgaaggcactgtgtctcttctttatagaccacatccactctgagtggctgggaacatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaggcactgtgtctcttctttatagaccacatccactctgagtggctgggaacatct 620
Query: 421 ccaaactggaataagcatcttcttttcatgtgttctgctatagagaacaagtgagtggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaactggaataagcatcttcttttcatgtgttctgctatagagaacaagtgagtggac 680
Query: 481 acacatatgacaagccgaacatgcggcagctgagttcatggtctgaaagtggggatgaat 540
||||||||||||| ||||||| | ||| |||||| ||||||||||||||||||||||||
Sbjct: 681 acacatatgacaaaccgaacacgtggctgctgaggtcatggtctgaaagtggggatgaac 740
Query: 541 gtgtccctgaaagcctctgccaattagctcatagtacgtacaggaagagaaaggaagaag 600
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 gtgtccccgaaagcctctgccaattagctcatagtatgtacaggaagagaaaggaagaag 800
Query: 601 actgtggctagga 613
|||||||||||||
Sbjct: 801 actgtggctagga 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
