Query= MSMg01no507_i01.b1 MSMg01no507_i01.b1 CHROMAT_FILE:
MSMg01no507_i01.b1 PHD_FILE: MSMg01no507_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:04 2005
(636 letters)
>mm_chr11_76721917_76722951
Length = 1035
Score = 1081 bits (559), Expect = 0.0
Identities = 615/635 (96%), Gaps = 4/635 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaggccagcctgctctacaaagtgagttccaggacagccagggctatacagaga 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gaattcaaggccagcctggtctacaaagtgagttccaggacagccagggctatacagaga 804
Query: 65 aaccctgtctc---aaaaaaaaaaaaaaaaaatcaaaagcagtccttgtttttctgagca 121
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 803 aaccctgtctcaaaaaaaaaaaaaaaaaaaaatcaaaagcagtcctcg-ttttctgagca 745
Query: 122 atgaaataacccaatttggacaagggtaggctaaaacagcacaacactaaagacaggcat 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ataaaataacccaatttggacaagggtaggctaaaacagcacaacactaaagacaggcat 685
Query: 182 gagagttagcactaactcctgttatgtcatcgactgtgactttcagacagctatttaact 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 gagagttagcactaactcctgttatgtcattgactgtgactttcagacagctatttaact 625
Query: 242 gttaaagtttcagtttcctctgaacaaacaaataaacaaaaagttggatagtaatacttt 301
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 624 gttaaagtttcagtttcctctgaacaaacaaagaaacaaaaagttgggtagtaatacttt 565
Query: 302 gctgtgaaaattgagacagtttgtgtaaagaagcgaatctgctgtcctgctaataccttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctgtgaaaattgagacagtttgtgtaaagaagcgaatctgctgtcctgctaataccttt 505
Query: 362 acaaagtcgtgccaactactattacaaatatgccaactaccattgcaaaggtcattgtgc 421
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 504 acaaagtcgtgccaactactactacaaatatgccaactaccattacaaaggtcattgtgt 445
Query: 422 taactaccattgcaaatatcgtgccaattaactgctattacaaatgtggtggtgatttgg 481
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 444 taactaccattgcaaacatcgtgccaattaactactattacaaatgcggtggtgatttgg 385
Query: 482 aaagctacgcacaccctcaagctttgcattttgcctgactgcatttgccaaggccacata 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagctacgcacaccctcaagctttacattttgcctgactgcatttgccaaggccacata 325
Query: 542 tttacattggctcagtggccctcttacaaagaatgccagctgggcatggtggcgcacgcc 601
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 324 tttacattggctcagtggccctcttacaaagaatgccagctgggtgtggtggcacacgcc 265
Query: 602 tttaagcccagcactcgggaggcagaggcaggcag 636
|||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaagcccagcactcgggaggcagaggcaggcag 230
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_i01.g1 MSMg01no507_i01.g1 CHROMAT_FILE:
MSMg01no507_i01.g1 PHD_FILE: MSMg01no507_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:04 2005
(543 letters)
>mm_chr11_76661466_76662408
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%)
Strand = Plus / Plus
Query: 1 actgattactgagtatttattgaataattggtgtctgtcaaagctagaagctgggaagca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgattactgagtatttattgagtaattggtgtctgtcaaagctagaagctgggaagca 260
Query: 61 aggcattgcttgcatagttagagatccaatgcagggatgaacaatgcaatacatctgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcattgcttgcatagttagagatccaatgcagggatgaacaatgcaatacatctgtgg 320
Query: 121 ggacattcctgaggaaaacctcattcagtctgaggagaaggcaaccaagaagctagggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacattcctgaggaaaacctcattcagtctgaggagaaggcaaccaagaagctagggaa 380
Query: 181 gaagccaagatgggagtgaagaattctggatagaaggaggagcatgcatgggaggttgga 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gaagccaagatgggagtgaagaattctggatagaaggaggagcatgcacgggaggttgga 440
Query: 241 aagtttacgagcagagactaggtgttctagaattgtttgtaggttcaggttactggtgaa 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtttacgagcagagcctaggtgttctagaattgtttgtaggttcaggttactggtgaa 500
Query: 301 ggggatcacagaggtatcaataaagagccaaggatgggtttgaagctaatttagaaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggatcacagaggtatcaataaagagccaaggatgggtttgaagctaatttagaaaaat 560
Query: 361 ctccccctggcagtaacttgaagaacagaataggcaatcttaaacatgaggccaagagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccccctggcagtaacttgaagaacagaataggcaatcttaaacatgaggccaagagac 620
Query: 421 ccacaagaagcacataatccaagaaggtactgagtccttgaacaaggatggagctggtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacaagaagcacataatccaagaaggtactgagtccttgaacaaggatggagctggtgg 680
Query: 481 aaatggaaagaaatggctggaaatgactttaggggtgaaatgggacagttcctgccgacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 aaatggaaagaaatggctggaaatgactttaggggtgaaatgggacagttcctgcggacc 740
Query: 541 cag 543
|||
Sbjct: 741 cag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
