Query= MSMg01no507_j13.b1 MSMg01no507_j13.b1 CHROMAT_FILE:
MSMg01no507_j13.b1 PHD_FILE: MSMg01no507_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:11 2005
(247 letters)
>mm_chr11_40409438_40410084
Length = 647
Score = 414 bits (214), Expect = e-120
Identities = 245/268 (91%), Gaps = 21/268 (7%)
Strand = Plus / Minus
Query: 1 ggcatgcatctggttgtatcgtgtggtcttggataacccaaagaagaaagaggctttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggcatgcatctggttgtatcgtgtggtcttggataacccaaagaagaaagaggctttctt 287
Query: 61 gaaagagtctcagtgcttccagctgttctcatttcttctgtcactgcttggttgtgtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaagagtctcagtgcttccagctgttctcatttcttctgtcactgcttggttgtgtagc 227
Query: 121 ttggaaaagaaatgagatgctggtaggagagagaggagaga------------------- 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttggaaaagaaatgagatgctggtaggagagagaggagagagagagagaagggggggagg 167
Query: 162 gagagagagagaaagagagagagagagagagggagagaga--atctataaggtgtgatat 219
|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 166 gagagagagagagagagagagagagagagagagagagagaatatctataaggtgtgatat 107
Query: 220 acttcagcatctacattgacctggttaa 247
||||||||||||||||||||||||||||
Sbjct: 106 acttcagcatctacattgacctggttaa 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no507_j13.g1 MSMg01no507_j13.g1 CHROMAT_FILE:
MSMg01no507_j13.g1 PHD_FILE: MSMg01no507_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:11 2005
(610 letters)
>mm_chr11_40235147_40236156
Length = 1010
Score = 1085 bits (561), Expect = 0.0
Identities = 594/605 (98%)
Strand = Plus / Plus
Query: 1 agctctcttcttctgagtgtgggctgaatgtaagcaggagcttcatgcccctgcagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctcttcttctgagtgtgggctgaatgtaagcaggagcttcatgcccctgcagcttt 260
Query: 61 gacacactgccatactggtccttaactgaaagataaaaataaacccctcctcccttaagt 120
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacactgccataatggtccttagctgaaagataaaaataaacccctcctcccttaagt 320
Query: 121 tgcttttgtgaagtgtttttgccctaatagcatgacaaggaaataagaaaggctgtaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tgcttttgtgaagtgtttttgccctaatagcatgacaaggaaataagaaagactgtaaca 380
Query: 181 aaaggatatttgttgggggctaattagagactatcatttctcagtggatcattcctcttg 240
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 381 aaaggatatttgttgggagctaattagagactatcgtttctcagtggatcattcctctag 440
Query: 241 tccatatttcacagaattcagtgctattgctttaggaaattattcacatagccacagatg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccacatttcacagaattcagtgctattgctttaggaaattattcacatagccacagatg 500
Query: 301 aagacaagggagataaagacaaccaatgatagactttcagtttcagaagaatgataataa 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aagacaagggagataaagacaaccaatgatagactttcagcttcagaagaatgataataa 560
Query: 361 tcatttgagatttggagcaagaacatgaagagagaaaaaccagtcccctaaaatgttcca 420
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tcatttgagatttggagcaaaaacatgaagagagaaaaaatagtcccctaaaatgttcca 620
Query: 421 aaatagtgcaccttaatacaatcaacgtctaatgctcacagttaccagacatggtagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatagtgcaccttaatacaatcaacgtctaatgctcacagttaccagacatggtagaaa 680
Query: 481 ccacagtgtaactggaagggcttacttactaccaaccatttccagctctactcacgttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccacagtgtaactggaagggcttacttactaccaaccatttccagctctactcacgttcc 740
Query: 541 tttgctcatgcaaatgatttagtaaaatcaaatagcttttaagctcaagaactcaaggaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgctcatgcaaatgatttagtaaaatcaaatagcttttaagctcaagaactcaaggaa 800
Query: 601 aagca 605
|||||
Sbjct: 801 aagca 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
