NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGGAGGC
GCGGAATTCTCAGTTTTACCACTACATACAGTGATATAAGTCTAAGAAGA
GGGAAAACTGATTTCTCAGCAAAGAAGAGGAGCCAGTCATGGGGTGGCTC
CAGCCTGTAGGATACTTCAACAAAAGAACAGTTAGGCTCTATAAGAATTC
TGTGATGGACTTCAGATGTAAGAGATTAGAAGTCTAAAAATACATTAAGC
AGAAGGGAATTTAACTATACATATTAAACTATATTAAAAACCTTAGATCA
AAGCAAGGAGATAGGGTGCCTATCCTATCTCATATAGTAGGAATTTAAGC
CTTGAGAATTATATAAAGAGAGAGCCTGGAAATAGGTTCAAACAGTAAGT
AGAGAGAGGTGTTAAGTAAATAATTAAGGCCTTGATCTCATGAAAGTCAG
AGCAGGGGACAATAGAAGCACTGTTTCAACAGACAATATGTGTTTAGAGT
TCTATATTTGGTTTAAATTGATTTAATTGTCAAGATGAGTATGATTTTGA
TTTAGGTGCTTATATTGAAAACCTGCTGGGAGAGAGGTCAAGTTAAATGT
TTAATGAATACTGGTTATTGGACTAAGAACATGCTATTTTAGGGGAATGT
CTCTGCATTTCTTTTGACAGGAAAGGAGCATAGGCTCTGGACCCCTTCCA
GAGTGAAATGATTCAGATATGACAGGGTGAAACTGCCCTAAAACTA

NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTCAACACAATTCTGAAGGCTTTCCAAATACAAT
ATGAGAACAAAACAAAACGAAAGAAAACACAAAAATCAGAAAAGAAGTTT
GAAATGAGAACATATATACCTATATAGCTGGCCTTCTTGTATATATGGAT
TGTTTTAGATCTTACACATATTTACTTGTTTTTCCTCCTTTGTAGTCTTT
GAAATCTGTGAGTGTTTCAAATTGAGGCAGAGAACTGTTTGTTAAAAGAG
TAAAAACTCATGACTGCCTTTCNAGTAATTAAATCATCATTTCAATGATG
TAAATGAAATATGGACATCTAAAAGTTATCCACTCTGATGGCTAATCAAT
TGTTTCATAGCACTTTACGCATTTTAGGTGGTTCATTTATATATTTTAGG
TTCTGAAATAATGGAACCTTTGTTTATAAAGACTTTTTTGTTGTAAATTG
GATTTCTGTGTGTTTTACAATTTCTAAATAGAAATAGTGAAATAAAAATA
CTATGGTTTCCACATTGATTGAAAAAACAACCAACATCAAAATAAAATTA
AAATATTTCTCCTTTCAATTTCTTTCCTCCAACATCTACCATATATTTCT
CCTTGCTATATTAAAAATTTATGACCTCTTTTCTCATTTTTATATGTGAG
TATGTATAAAATCTTGCTTAAAAGGAGGGAATCTTTTTCTTTTTCTTTT

Query= MSMg01no508_n13.b1 MSMg01no508_n13.b1 CHROMAT_FILE:
MSMg01no508_n13.b1 PHD_FILE: MSMg01no508_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:54 2005
         (621 letters)



>mm_chr11_27880387_27881407
          Length = 1021

 Score = 1170 bits (605), Expect = 0.0
 Identities = 617/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgatataagtctaagaagagggaaaactgatttctcagcaaagaagaggagccagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 201 gtgatataagtctaagaagagggaaaactgatttctcagcaaagaagaggagcgagtcac 260

                                                                       
Query: 61  ggggtggctccagcctgtaggatacttcaacaaaagaacagttaggctctataagaattc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtggctccagcgtgtaggatacttcaacaaaagaacagttaggctctataagaattc 320

                                                                       
Query: 121 tgtgatggacttcagatgtaagagattagaagtctaaaaatacattaagcagaagggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgatggacttcagatgtaagagattagaagtctaaaaatacattaagcagaagggaat 380

                                                                       
Query: 181 ttaactatacatattaaactatattaaaaaccttagatcaaagcaaggagatagggtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaactatacatattaaactatattaaaaaccttagatcaaagcaaggagatagggtgcc 440

                                                                       
Query: 241 tatcctatctcatatagtaggaatttaagccttgagaattatataaagagagagcctgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcctatctcatatagtaggaatttaagccttgagaattatataaagagagagcctgga 500

                                                                       
Query: 301 aataggttcaaacagtaagtagagagaggtgttaagtaaataattaaggccttgatctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataggttcaaacagtaagtagagagaggtgttaagtaaataattaaggccttgatctca 560

                                                                       
Query: 361 tgaaagtcagagcaggggacaatagaagcactgtttcaacagacaatatgtgtttagagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaagtcagagcaggggacaatagaagcactgtttcaacagacaatatgtgtttagagt 620

                                                                       
Query: 421 tctatatttggtttaaattgatttaattgtcaagatgagtatgattttgatttaggtgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctatatttggtttaaattgatttaattgtcaagatgagtatgattttgatttaggtgct 680

                                                                       
Query: 481 tatattgaaaacctgctgggagagaggtcaagttaaatgtttaatgaatactggttattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatattgaaaacctgctgggagagaggtcaagttaaatgtttaatgaatactggttattg 740

                                                                       
Query: 541 gactaagaacatgctattttaggggaatgtctctgcatttcttttgacaggaaaggagca 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaccaagaacatgctattttaggggaatgtctctgcatttcttttgacaggaaaggagca 800

                                
Query: 601 taggctctggaccccttccag 621
           |||||||||||||||||||||
Sbjct: 801 taggctctggaccccttccag 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)