BAC Information

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BAC

Clone NameMSMg01-509N07
Chromosome11 (Build37)
Map Location 107,157,013 - 107,157,581
singlet/doubletsinglet
Overlap genePitpnc1
Upstream geneGh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509N07.T7 (MSMg01no509_n07.b1)MSMg01-509N07.TJ (MSMg01no509_n07.g1)
ACCAG583412AG583413
length7501,560
length of high quality
(start - end)
569 (85 - 653)---
definitionCHROMAT_FILE: MSMg01no509_n07.b1 PHD_FILE: MSMg01no509_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:12 2005CHROMAT_FILE: MSMg01no509_n07.g1 PHD_FILE: MSMg01no509_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCAXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCATACCGAGGCGCGG
AATTCCTGAAATGCTTACAACGGCGAGCTNNAANAAAACTCAGTTTTGAG
TGTCACCTCTTGGGGACCATCGAAACTCCATCCAGGCAAAGTCCCTCTTA
AATTAGCTATCTTGTATTCTCAGCACTAAGGAGATGACCTAATCTAAGGT
GGCTTAGGAAGAGGCACGGCCCCAGATCATACAGAAGGTGCCCAGCAGTT
TTGACATCTGCCAGCCACTCTTTACAGTCTAGCCAGTCACAAGGTGGCAC
AGTGCCTGCCCCACATANATAGTTTTGCCCTGNAAGTAATTTGATCCTGC
TCAGGGTATGAAGTTTTAAGATGTTTCTGGGTCCCCTCTCCACTCATTGC
AATCACTTCCATTGCACAAAGGAGGAAAGACAGGCACATTAGAAGACAGC
AAAGCCAGACTATACGATATCCCATGCCTGGTCCCAGTGGGCCAGGGCCT
CTCTGAGGTTTCAGGCACAGAGCAGGGCTGGGAGACAGAGACTCAAGTGA
GACTTGGATTGAGAGGCTCTGAGCGGCTACTCACACTATCGTTGCTTCCC
TTGGTGTCTTCATACTTGGTTTCTATGTGGATGGAGAATTTCGGCAGGAA
GGAACACTGTGGAGAAAAAATAGACTTTGATCAGCAGAGTAGTTGCCTTC
TGTCTTTAGTATGGCATGGGCCGCTTGGCTGACCATTCGGTTGGGAGCAN

CTCAATCTCTCTTATCGGCCACCATACCTAGGAACACCGAGCGTGTGTCC
CCACCTACAGTGTAAGGGGNGACGGAGAATACGAGTTTTCTCCCAGACGT
GGAGAGGGTGGGTGCTCATTTATCGACCCACAATATTGCCGACTTTCCGT
ATGCCCCCTGTAGCCCCTCNCCTCCCCGCTCTGTGCGGCCCACATCTTTA
TCACGCTGTATGCTGCACTGCGCAGACGGCATACTCCGTCTACCCACCTC
CTTCTTCTCTTATACGTCCTACGCCCCTGTTATCTATCTACTAAATATNC
TGCGTATGCTCGTACCCCCACCCTGCTCTCGTGGTGTGCGGCTGGTGTAC
ACACGTATAAGCCCAGNTCACTCAGGCGCGCCGCGCGATATTACTGACCT
ACGTCCGATGTCCTTATCCGCCCTCGGTACGTACTAGATAGGCTATTCGG
CGTGCGGCGCGGCGCGCGCCACGACCGTGAGATGAGTATAGATCGACGCG
CGCAGTATCGCTGTATCGTATTGTCNCGTACGTATAGACTCGGGCTCGTA
GTCTTTCACCGACCCGCCGTGCACGTAGTTGGTGGTTCCGGCGCGCGTGT
GTTATCTTATCGCCGTCGTCCTACCGCAGCACCTACGGTGATTTACTANC
ACCTGCGGCGCGNATCTTCGCGACAGGNGCGTGCACACGCGCGCTGTTTG
GTGGTGCCATACTGGTGAATGTTCTCACCNCGACGATGCACGTATATAGC
CACATTCATGCTCACTACACCACATATNANTGTGTCCTAGATTCTGTCTA
TCGATCGTGACGTATAGCACCGACTGTAGTCTCTCACTCTACTCATATCG
TACTAGCGCGCCATACATTCTTATACGACTTAATAACGGNCATACGATGG
ACTCAAAGGCCGCTGTACGATCGTACATGCTGCCGGCGTATTGCTTGTCN
CTACGAGGTGATGTACCGCGGTACTCGCTCGCTAGAAATTAGATGAACGT
GACGGCGCGACACGCACACTCACGNATCGCGGCTACTAGACTATATCTNC
GCGCAGTGGGGGAATGCGCCGCGATCGCGGGAAGTGTGGCACTCCGACAC
ATTGGNGCGTGCTTAGTGGANCAACGNCGACACTCATACGCGNCGCATCG
GNGTGCGAGTGCGAGATACAGTCGTGCGCTAGAATGAATCATGATTACGC
GCGCGCGCGCNACNACATACGCGACACAGACGCGATATATATGTACGCAA
TGTTCACTCCGATANCAACGAACGTGTTCCACTGTATGGATACGTATCGT
GTACGCGCNTCTGTGCTTGATTGTCGATCTGNCGACTGCNTCGTGTGTCT
GCGTCACGTCTATGATGCTTGATATATATCGCTGCGCGTCGCGNGTCTCT
CTCTTGCTTACACAATCTAATATGTCGTTAGCTAGCCGTCATACACGCTC
GCGAGACGCTGATACTCGAGCGTGATAGACGCGCACAGCTAGTCAGCTCC
GCGGCGCGCGATGATATATGACGACCGTGCGTGCGACATTCGCGCTGCNC
ATCAGGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_n07.b1 MSMg01no509_n07.b1 CHROMAT_FILE:
MSMg01no509_n07.b1 PHD_FILE: MSMg01no509_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:12 2005
         (569 letters)



>mm_chr11_107156813_107157781
          Length = 969

 Score =  909 bits (470), Expect = 0.0
 Identities = 545/571 (95%), Gaps = 4/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaactcagttttgagtgtcacctcttggggaccatcgaaactccatccaggcaaagtcc 60
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaaactcagttttgagcgtcacctcttggggaccattgaaactccatccaggcaaagtcc 260

                                                                       
Query: 61  ctcttaaattagctatcttgtattctcagcactaaggagatgacctaatctaaggtggct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 261 ctcttaaattagctatcttgtattctcagcactaaggagatgatctaatctgaggtggct 320

                                                                       
Query: 121 taggaagaggcacggccccagatcatacagaaggtgcccagcagttttgacatctgccag 180
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 321 taggaagaggcacggccccagatcatacagaaggtgcccagcagctctgacatctgccag 380

                                                                       
Query: 181 ccactctttacagtctagccagtcacaaggtggcacagtgcctgccccacatanat--ag 238
            |||||||||  ||||||||||||||||||||||||||||||||||||||| | ||  ||
Sbjct: 381 tcactctttatggtctagccagtcacaaggtggcacagtgcctgccccaca-a-atacag 438

                                                                       
Query: 239 ttttgccctgnaagtaatttgatcctgctcagggtatgaagttttaagatgtttctgggt 298
              ||||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 439 ccatgccctgtaagtaatttgatactgctcagggtaggaagttttaagatgtttctgagt 498

                                                                       
Query: 299 cccctctccactcattgcaatcacttccattgcacaaaggaggaaagacaggcacattag 358
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 cccctctccactcattgcaatcacttccattgcagaaaggaggaaagacaggcacattag 558

                                                                       
Query: 359 aagacagcaaagccagactatacgatatcccatgcctggtcccagtgggccagggcctct 418
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 559 aagacagcaaagccagactataagatatcccatgcctggtcccaatgggccagggcctct 618

                                                                       
Query: 419 ctgaggtttcaggcacagagcagggctgggagacagagactcaagtgagacttggattga 478
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 ctgaggtttcaggcacagagcagggctgggagaccgagactcaagtgagacttggattga 678

                                                                       
Query: 479 gaggctctgagcggctactcacactatcgttgcttcccttggtgtcttcatacttggttt 538
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 679 gaggctctgagcagctactcacactatcgttgcttcccttgttgtcttcatacttggttt 738

                                          
Query: 539 ctatgtggatggagaatttcggcaggaagga 569
           |||||||||||||||||||||||||||||||
Sbjct: 739 ctatgtggatggagaatttcggcaggaagga 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)