BAC Information

Click to search

BAC

Clone NameMSMg01-510K05
Chromosome11 (Build37)
Map Location 63,979,458 - 63,980,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
Downstream geneEG544785, Hs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510K05.T7 (MSMg01no510_k05.b1)MSMg01-510K05.TJ (MSMg01no510_k05.g1)
ACCAG584028AG584029
length708721
length of high quality
(start - end)
631 (78 - 708)54 (374 - 427)
definitionCHROMAT_FILE: MSMg01no510_k05.b1 PHD_FILE: MSMg01no510_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:16 2005CHROMAT_FILE: MSMg01no510_k05.g1 PHD_FILE: MSMg01no510_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCCCNCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGA
GGGCNGGATTCAGAGATTCCAGAAACTTTCTGGCTACTTTTCTTTGGGTA
ACAATGATCACACAACTCAGGCTAGGCTCTTTTCTCTTTCTCCTTGAGCT
TGGGTTGTGGAGCTATGTCTGGGTGGTAGCTGAGTCTGTCAGCTCACCAA
CTCTTCTGCGCCATGCCACCAGGGCCAGCTCTCCTGCCTGCTGCAAGTTC
TCCCATTCTTATGTCCTCTGTGCCATAGCTGGTTTTGTATGTCCCCTCCC
TTACCTCCTCTCTCATGATTTTTTTAGCTTTGGGGNGGGAGTACCAGAGA
CTGAAGAAAAACAAACTCAAAGATTCATGTACAGAAAAGTTGGGATTGGA
TGAGCCATGGGAGCTGATGGAGAGGCACCAGAAGCCCAGAGATTCCTCGT
GTTTGTTATATACAGCTGAACAAGAAGGCTGGTTGATAGGAATGAAGTGG
ACATGGGTTAGCTAATCTCCATAGGGAGTTTCTGTAGGGGAACAGTTCTA
GGCTTCAGTCATCTGGGAGGGGGAAGCTGTGGTTGACAGTTTCTACACAC
ATTACATTCAGCTAAAGATCAGTCCTTTCTAAGGTTTGCACTTGGACCAT
AGAAAGACTTTGCTAGTCCCCCAGGTCTGAGGCATTGCTGTTCTCGATAT
GGCTGTGT
CGCCGNAACGATGCAGTGGGAGGCCTGGNGGNNGNCTGGTTTCGAAGCGC
GGGNGAANNANANAAGTTAACGNGCACGGGGGGAANGNCACNACAGGNCN
GCNANCNGNCACCNGGCANNTTCCCACCCACCACAAGCCACAAGCACGCC
CGGCACNCNNCCACCACTGGAAAGAGGCNGCGCNGNGCCAAAACCCNCAA
CACCNCAGGCNANGNANGGNCNCNCCGGGCNGAAAGAGCCCAGAAGAAGG
NGTTTTCTGCANNCGGGGAAACNGNCCNNCCANACNCAGGACAGGCAGNC
NGNCNCAGGNCNAGAGTTATTTTTTTTTGANGGANGCNGCCNCGNNCNNG
CAACAGCANNCCTTTGTGGTCCTTACATGTTCTCAGTCATTTCTAGATAT
GTCTGAAATTTAAACAGACAAAGCTTCATGACCATACCTCAACCAATATT
ACTTTTTTAAAAAATGTAGTTAGTTAGTTGTGTGAGTGGGGCAAGAAGAG
GATGTCTGGTTCTCTGATACTGTAGTTATGAGTGGTTGTGAGTCACTTGA
TGAGTGTGTTGGGAATTGAACTCAGGTCCTCAGTGAGAGTAGGACGCACA
CCTAACCACTAAACATCTCTCCTGTCCCACATTTTAATTCTTCGACATAA
ATGTTTTCCATGAATATCGAAAAAAAAAAAAGGCAAAGAAACCAAGCTCA
CTTGTCATCCCACCACCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_k05.b1 MSMg01no510_k05.b1 CHROMAT_FILE:
MSMg01no510_k05.b1 PHD_FILE: MSMg01no510_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:16 2005
         (631 letters)



>mm_chr11_63979258_63980288
          Length = 1031

 Score = 1108 bits (573), Expect = 0.0
 Identities = 616/636 (96%), Gaps = 10/636 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggctacttttctttgggtaacaatgatcacacaactcaggctaggctcttttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctggctacttttctttgggtaacaatgatcacacaactcaggctaggctcttttctct 260

                                                                       
Query: 61  ttctccttgagcttgggttgtggagctatgtctgggtggtagctgagtctgtcagctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctccttgagcttgggttgtggagctatgtctgggtggtagctgagtctgtcagctcac 320

                                                                       
Query: 121 caactcttctgcgccatgccaccagggccagctctcctgcctgctgcaagttctcccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactcttctgcgccatgccaccagggccagctctcctgcctgctgcaagttctcccatt 380

                                                                       
Query: 181 cttatgtcctctgtgccatagctggttttgtatgtcccctcccttacctcctctctcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 cttatgtcctctgtgccatagctggttttgtatgtcccctcccttacctcctctctcgtg 440

                                                                       
Query: 241 a-----tttttttagctttggggngggagtaccagagactgaagaaaaacaaactcaaag 295
           |          | |||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct: 441 accagg-----tcagctttggggtgggagtactagacactgaagaaaaacaaactcaaag 495

                                                                       
Query: 296 attcatgtacagaaaagttgggattggatgagccatgggagctgatggagaggcaccaga 355
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 attcatgtacagaaaagttgggattggatgagccatggcagctgatggagaggcaccaga 555

                                                                       
Query: 356 agcccagagattcctcgtgtttgttatatacagctgaacaagaaggctggttgataggaa 415
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcccagagattcctcttgtttgttatatacagctgaacaagaaggctggttgataggaa 615

                                                                       
Query: 416 tgaagtggacatgggttagctaatctccatagggagtttctgtaggggaacagttctagg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgaagtggacatgggttagctaatctccatagggagtttctgtaggggaacagttctagg 675

                                                                       
Query: 476 cttcagtcatctgggagggggaagctgtggttgacagtttctacacacattacattcagc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cttcagtcatctgggagggggaagctgtggttgacagtttctacacacattacattcagc 735

                                                                       
Query: 536 taaagatcagtcctttctaaggtttgcacttggaccatagaaagactttgctagtccccc 595
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 736 taaagatcagtcctttctaaggtttgcacttggaccagagaaaggctttgctagtccccc 795

                                               
Query: 596 aggtctgaggcattgctgttctcgatatggctgtgt 631
           |||||||||||||||||||||| |||||||||||||
Sbjct: 796 aggtctgaggcattgctgttcttgatatggctgtgt 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)