Query= MSMg01no511_l24.b1 MSMg01no511_l24.b1 CHROMAT_FILE:
MSMg01no511_l24.b1 PHD_FILE: MSMg01no511_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:42 2005
(519 letters)
>mm_chr11_23799655_23800573
Length = 919
Score = 915 bits (473), Expect = 0.0
Identities = 511/531 (96%), Gaps = 12/531 (2%)
Strand = Plus / Plus
Query: 1 aaaagtaagttttattcagcagtaaatctagaaggttgaaaaactctaggcctaggttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaagtaagttttattcagcagtaaatctagaaggttgaaaaactctaggcctaggttag 248
Query: 61 cagatggagactggaagctgaaacctccaagatgtggccttgcagaggatcagattgtac 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 cagatggagactggaagctgaaacctccaagatgtggcctggcagaggatcagattgtac 308
Query: 121 agagcccagaagcttccaggccgaggccgagggatagtaagaccagagaaagaagcacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agagcccagaagcttccaggccgaggccgagggatagtaagaccagagaaagaagcacta 368
Query: 181 gggaggagcactgccc------------aagctgtgcatttgcacaggtggagtacagct 228
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 369 gggaggagcactgcccggagcactgcccaagctgtgcatttgcacaggtggagtacagct 428
Query: 229 ctcgtctcaccccttcttctgaggaagtaaaagccgcatttacagggtagctctggaatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcgtctcaccccttcttctgaggaagtaaaagccgcatttacagggtagctctggaatt 488
Query: 289 aattattgactcacaggaaaaagaggaatggaggaattcttgtgttttagacttctcact 348
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 489 aattatcgactcacaggaaaaagaggaatggagaaattcttgtgttttagacttctcact 548
Query: 349 gttggggtgacctgttatgttgtcattgtgtttggaaaaggaacaaggagctggagagca 408
|||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 549 gttggggtgatctgttttgtcgtcattgtgtctggaaaaggaacaaggagctggagagca 608
Query: 409 gaactggctgctacccgggccacagagctgaaaatatttctcacagagagttactaggac 468
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaaatggctgctacccgggccacagagctgaaaatatttctcacagagagttactaggac 668
Query: 469 ttattcataaattaagactactcctctagcagttatacatgactaaacaat 519
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttattcataaattaagactactcctctagcagttatacatgactaaacaat 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_l24.g1 MSMg01no511_l24.g1 CHROMAT_FILE:
MSMg01no511_l24.g1 PHD_FILE: MSMg01no511_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:42 2005
(454 letters)
>mm_chr11_23981900_23982750
Length = 851
Score = 855 bits (442), Expect = 0.0
Identities = 450/454 (99%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 1 tctctacaaggagaggaagacaaaataaaatgcttctgttttcaacaagagagactggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctctacaaggagaggaagacaaaataaaatgcttctgttttcaacaagagagactggac 592
Query: 61 ggcctcaattgtcccagcgacagcagaccaatatatttatatattcatgtttatttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggcctcaattgtcccagcgacagcagaccaatatatttatatattcatgtttatttctct 532
Query: 121 ctcttctcccactccccccccccccacaaccctgccgtcctcccccttcctcgttacaaa 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctcttctcccact---cccccccccacaaccctgccgtcctcccccttcctcgttacaaa 475
Query: 181 cataaaaagaggaggcaaaatccttataagaaatgttgagaagaggcagggaaaccaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cataaaaagaggaggcaaaatccttataagaaatgttgagaagaggcagggaaaccaggg 415
Query: 241 ctgctggggggagggggaggagagaagggagccgtgtctctcccaagtttgttttccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgctggggggagggggaggagagaagggagccgtgtctctcccaagtttgttttccaag 355
Query: 301 tggatttttctgcacgcgttaaacgttaaagcaaaaggagactgaaaatcggagaggcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tggatttttctgcacgcgttaaacgttaaagcaaaaggagactgaaaatcggagaggcaa 295
Query: 361 agcaaagaaacaaaagcaaagccaagggctgcaggccccgggccggggccctgcgggagt 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 294 agcaaagaaacaaaagcaaagccaaggactgcaggccccgggccggggccctgcgggagt 235
Query: 421 aggccgcgcaaaaagtgaagttgggcgcccgggc 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 aggccgcgcaaaaagtgaagttgggcgcccgggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 851
Length adjustment: 10
Effective length of query: 444
Effective length of database: 841
Effective search space: 373404
Effective search space used: 373404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
