Query= MSMg01no511_n08.b1 MSMg01no511_n08.b1 CHROMAT_FILE:
MSMg01no511_n08.b1 PHD_FILE: MSMg01no511_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:48 2005
(503 letters)
>mm_chr11_89540353_89541255
Length = 903
Score = 944 bits (488), Expect = 0.0
Identities = 501/506 (99%), Gaps = 3/506 (0%)
Strand = Plus / Minus
Query: 1 ctttgaata-a--ttttttttatcccttacttaacttgacagcaaatgcaaataccttca 57
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctttgaatacattttttttttatcccttacttaacttgacagcaaatgcaaataccttca 657
Query: 58 aaatccactgactctcctcttctccatagccacaccctggtctatgctatggtcttatct 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aaatccactgactctcctcttctccatagccacaccctggtctatgctatggtcttatct 597
Query: 118 tgcattgctacctttctgtgtgtgtctgagtgaatctaaacccctcagcccccagtcaaa 177
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgcattgctacctttctgtatgtgtctgagtgaatctaaacccctcagcccccagtcaaa 537
Query: 178 gctgtctcttcagaaatgtaaagaggttaggtgtgggagtgggaacggcaggcttaaacc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gctgtctcttcagaaatgtaaagaggttaggtgtgggagtgggaacggcaggcttaaacc 477
Query: 238 atggctcagagattttgtggctgtgaagaaagctggagagtcccttcctttgaagcattg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atggctcagagattttgtggctgtgaagaaagctggagagtcccttcctttgaagcattg 417
Query: 298 tggtctccaggaggctcattattgctagagggtgcctatggcagacctttccttagtcag 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 tggtctccaggaggctcattattgctagagggtgcctatggcagacccttccttagtcag 357
Query: 358 tactgcagggaatgatctagaagaaaggcagaacctggacacgaaggaaggaatgtgaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tactgcagggaatgatctagaagaaaggcagaacctggacacgaaggaaggaatgtgaat 297
Query: 418 aactgagaagcagaaagactgtatcgggaacctcttggtggtggtggacgttctccttca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aactgagaagcagaaagactgtatcgggaacctcttggtggtggtggacgttctccttca 237
Query: 478 gaaccaaaggagaggagccctgggag 503
||||||||||||||||||||||||||
Sbjct: 236 gaaccaaaggagaggagccctgggag 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_n08.g1 MSMg01no511_n08.g1 CHROMAT_FILE:
MSMg01no511_n08.g1 PHD_FILE: MSMg01no511_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:48 2005
(551 letters)
>mm_chr11_70334596_70335546
Length = 951
Score = 1040 bits (538), Expect = 0.0
Identities = 549/554 (99%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 1 ttttgtttgtttgtttgtttgtttttgtttttttcgagacagggtttttctgtgtagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtttgtttgtttgtttgtttttgtttttttcgagacagggtttttctgtgtagccc 260
Query: 61 tggaactcactctgtagaccaggctggccgagaactcagagatctgcctgcctctgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaactcactctgtagaccaggctggccgagaactcagagatctgcctgcctctgcctc 320
Query: 121 ccaagtgctgggattaaaggcctgtgccatcactgccaggcaggaattcaatttttccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagtgctgggattaaaggcctgtgccatcactgccaggcaggaattcaatttttccag 380
Query: 181 gttctcagatccaaaatcttgttaacgtgactttccccataccaacattgaatctatgaa 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcttagatccaaaatcttgttaacgtgactttccccataccaacattgaatctatgaa 440
Query: 241 aatttgactactccccacatttcccaagtttctttgtctaaatcagctttatgtatcatc 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctgactactccccacatttcccaagtttctttgtctaaatcagctttatgtatcatc 500
Query: 301 tggactatctttgcctttcttacagttgtacggtcactaaactataaaaggtcattcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggactatctttgcctttcttacagttgtacggtcactaaactataaaaggtcattcttt 560
Query: 361 tgtttgtttgctcagttctttgtttttgtttttgagaccaggtttttt---tgtttgttt 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tgtttgtttgctcagttctttgtttttgtttttgagaccaggttttttgtttgtttgttt 620
Query: 418 gtttgtttgttttccttgcgtagccctggtatcctggaacttgctttgcagaccaggttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttgtttgttttccttgcgtagccctggtatcctggaacttgctttgcagaccaggttg 680
Query: 478 gtcttgaactcacagagatctgcctgcctctgcctcctgagtgctgagattaaaggcatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttgaactcacagagatctgcctgcctctgcctcctgagtgctgagattaaaggcatg 740
Query: 538 tgctacaactgacc 551
||||||||||||||
Sbjct: 741 tgctacaactgacc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
