BAC Information

Click to search

BAC

Clone NameMSMg01-511P20
Chromosome11 (Build37)
Map Location 113,400,684 - 113,401,216
singlet/doubletsinglet
Overlap geneSlc39a11
Upstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
Downstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511P20.T7 (MSMg01no511_p20.b1)MSMg01-511P20.TJ (MSMg01no511_p20.g1)
ACCAG585054AG585055
length751740
length of high quality
(start - end)
474 (63 - 536)533 (70 - 602)
definitionCHROMAT_FILE: MSMg01no511_p20.b1 PHD_FILE: MSMg01no511_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:00 2005CHROMAT_FILE: MSMg01no511_p20.g1 PHD_FILE: MSMg01no511_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCAGXXXXXXXXXXXXXX
XXXXXXXXTTTCTTGGAAACATAGTGAATTTGAGACCAGCCTGGGCTACT
CGAGACCCTGTTTCAAAGACTGAGAGAGACGACTCATCAGTTACGGGCAT
CTGCTGCTCTTGCAGAGGACCCTGGTTCAGTTCCCAGCACCCACCTGGCA
GCTCACAACTGTCTGCAGTTATAGATCTGATGGCGCTTCTGACCTCTGAG
GGCTTCGGCACGCAAGCACGTACATACATACATACATACACACACACACA
CAAACACAAACACACAAACACATAAGAATTTTTTTTTTTTGGTTTTTCGA
GACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGG
CCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGC
TGGGATTAAAGGCGTGCGCCACCACGCCCGGCTCTTAAGATTTTTTTTTA
AAGATTTATTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACAC
TCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGGTGTGAGCCACCATGT
GGTTGCTGGGATTTGAACTCCGGACCTTCCGAAGAGCAGTCCGGTGCTCT
TTACTGCTGAGGCATCTCACCAGGCCAAGAATTTTTTTTTTATTCCTAAA
TTTATTTTTATGAGTACACTGTAGCTGGCCTCTGACACACCACAATAAGG
C
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACGCTCCTTTTCCACAAATCTATTACTGGG
ATTGACAGACGGACAAGCATATTTATTACCTCGGCTCTTTTAGGGCAGAC
CCAGACTGCCTAAGTAAAAAAAAAAAAAACGACTCCCAGAAGAATCAACT
ACTTAGATCGCCAAAACTGTTAAATCCATGAAGACAAAAGAAAAAAAAAA
GCGAGGGTGATGGCGGAGGGGAGAGCACATTCACCAAACCTTTTCACCAG
CTGCCCACCAGAAGGGTGTGAACACATTGCCCTCAGCAGCCTCCCATGGC
AGCCAGCCACCAATCCATCAGCACCTCTCACTGGGGGCTTGGTGATGGAC
AATTGCACCAGCTGGCCGGGCTTCCCCGCCCCAACACTACCACTCACTCA
CGCTGAGCCAATCTGCCTGATCTGGTGGCTAGGAAGCAGCCCAGCCCACA
CTGGCACGAGGGGAGCGGGGTGAGCTGCCTGGCTCCATTGAGAGAAAACT
CAGAGATCTAGGAATGAGCTTCTCCCAACGTTGCTCATCTCTCTCTCGGG
AGAGGTTTTGTGCTTCTCTCAGCTATCGCTGGCACTAGGACGCGGAGGCA
GGCCCTTAAAGGGGAAGAAGAAAAGATGCCTCCTCCCCTTCCAAACAGAC
TCCTCCCCTTCCAAACAGACTCCTCCCCTTCAAACAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_p20.g1 MSMg01no511_p20.g1 CHROMAT_FILE:
MSMg01no511_p20.g1 PHD_FILE: MSMg01no511_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:00 2005
         (533 letters)



>mm_chr11_113400484_113401421
          Length = 938

 Score =  911 bits (471), Expect = 0.0
 Identities = 516/533 (96%), Gaps = 5/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgctccttttccacaaatctattactgggattgacagacggacaagcatatttattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgctccttttccacaaatctattactgggattgacagacggacaagcatatttattac 260

                                                                       
Query: 61  ctcggctcttttagggcagacccagactgcctaagt----aaaaaaaaaaaaaacgactc 116
           ||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 261 ctcggctctttcagggcagacccagactgcctaagtgaaaaaaaaaaaaaaaaacgactc 320

                                                                       
Query: 117 ccagaagaatcaactacttagatcgccaaaactgttaaatccatgaagacaaaagaaaaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaagaatcaactacttagatcgccaaaactgttaaatccatgaagacaaaagaaaaa 380

                                                                       
Query: 177 aaaaag-cgagggtgatggcggaggggagagcacattcaccaaaccttttcaccagctgc 235
           | |||| |||||||||||||| ||||||||||||  |||||||| |||||||||||||||
Sbjct: 381 acaaagccgagggtgatggcgaaggggagagcacgctcaccaaatcttttcaccagctgc 440

                                                                       
Query: 236 ccaccagaagggtgtgaacacattgccctcagcagcctcccatggcagccagccaccaat 295
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgccagaagggtgtgaacacattgccctcagcagcctcccatggcagccagccaccaat 500

                                                                       
Query: 296 ccatcagcacctctcactgggggcttggtgatggacaattgcaccagctggccgggcttc 355
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatcagcacctctcgctgggggcttggtgatggacaattgcaccagctggccgggcttc 560

                                                                       
Query: 356 cccgccccaacactaccactcactcacgctgagccaatctgcctgatctggtggctagga 415
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 cccgccccaacactaccactcactcacgctgagccaatctgcccgatctggtggctagga 620

                                                                       
Query: 416 agcagcccagcccacactggcacgaggggagcggggtgagctgcctggctccattgagag 475
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 621 agcagcccagcccacactggcacgaggggagcagggtgagctgcgtggctccattgagag 680

                                                                
Query: 476 aaaactcagagatctaggaatgagcttctcccaacgttgctcatctctctctc 528
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 aaaactcagagatctaggaatgagcttctcccaaagttgctcatctctctctc 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 938
Length adjustment: 10
Effective length of query: 523
Effective length of database: 928
Effective search space:   485344
Effective search space used:   485344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)