BAC Information

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BAC

Clone NameMSMg01-512F11
Chromosome11 (Build37)
Map Location 58,117,235 - 58,117,813
singlet/doubletsinglet
Overlap genenone
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik
Downstream geneZfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F11.T7 (MSMg01no512_f11.b1)MSMg01-512F11.TJ (MSMg01no512_f11.g1)
ACCAG585323AG585324
length764771
length of high quality
(start - end)		610 (39 - 648)569 (68 - 636)
definitionCHROMAT_FILE: MSMg01no512_f11.b1 PHD_FILE: MSMg01no512_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005CHROMAT_FILE: MSMg01no512_f11.g1 PHD_FILE: MSMg01no512_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CATTCCCAAATCAAAGACTTAGACCTCCAAGGCGAGGGATGATGAACTTG
TTATTCGACAAAAGCCCATCTCTCAGTGCGGGGGGGTTGACTGATGGAGT
TCTCCACGGACTAATCCAGGGGGATGGCTAAGCCGAGACAGGTGGGGGCC
AAGGTTCAGGCCTAGTCAAAGGGTCCAGAGGAGGTTAACTAAGAGTTGGT
TAATGATGGATTTGTAGGATGTTAAAACCACTCAGAGGAGAGTTTGAAGA
GATTTTTAAAAGTAGCCCATGTAGCCAAAATGAATGAATGAATGAATGAA
TGAATGAATGAACAAACGAACGAATGAATAAATACATGGTATAAAGAGAT
TGCTTATCAATGCGGGTGTGTTCAGGTCCCCAGTGTAATAAACTGTGATG
CTTGACATATGGCTTCTTATTTGAAGTTTTTTTTTTCCCCTGACAGAGAA
TAAATTATTTTTTATTTTTCTTTTCATTTCTTCCCTTTTCTTGTCTGTCT
GTCTGTCGTTTCTTTTCTTTCTTTCTTTTTCCTTTCCTTTTTTTTTTTTT
TTTTTTTGGAGACAGATTTCTTTACATAGCCCTGGATGTTCTGGAATTCA
CTTTGTAGATGAGGCTGGGCTTGAACTCACAGAGATCTTCCTGCTTCTAC
CTGAGTGCTGGGATTAAGGTGTGTAACACTGTATCTTGGTGACATGGCTG
GGTGCAATGAACAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAAAAGCAC
CGGAAAAAATGTTCAACATGCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTAAGATTCCACCTCACACGAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
GCAGTTCCTCAGAAAACTGGACATGGTACTACCAGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
ATCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAAC
CCAGTCACAAAGGAACTCGCACAATATGTACTCACTTGTTCCCAATTCTA
AGAAGGGGCAAAGTGTCCACACTTTGGTCTTTGTTCTTCTTGAGNTTCAT
GCGTTTAGCAAAATGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCT
ATATCCACTTATCAGTGAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f11.b1 MSMg01no512_f11.b1 CHROMAT_FILE:
MSMg01no512_f11.b1 PHD_FILE: MSMg01no512_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:27 2005
         (610 letters)



>mm_chr11_58117018_58118025
          Length = 1008

 Score = 1038 bits (537), Expect = 0.0
 Identities = 574/595 (96%), Gaps = 18/595 (3%)
 Strand = Plus / Plus

                                                                       
Query: 18  ccaaatcaaagacttagacctccaaggcgagggatgatgaacttgttattcgacaaaagc 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccaaatcaaagacttagacctccaaggcgagggatgatgaacttgttattcgacaaaagc 277

                                                                       
Query: 78  ccatctctcagtgcgggggggttgactgatggagttctccacggactaatccaggggg-a 136
           |||||||||||||||||||  || |||||||||||||||||||||||||||||||||| |
Sbjct: 278 ccatctctcagtgcggggg--ttaactgatggagttctccacggactaatccagggggga 335

                                                                       
Query: 137 tggctaagccgagacaggtgggggccaaggttcaggcctagtcaaagggtccagaggagg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggctaagccgagacaggtgggggccaaggttcaggcctagtcaaagggtccagaggagg 395

                                                                       
Query: 197 ttaactaagagttggttaatgatggatttgtaggatgttaaaaccactcagaggagagtt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaactaagagttggttaatgatggatttgtaggatgttaaaaccactcagaggagagtt 455

                                                                       
Query: 257 tgaagagatttttaaaagtagcccatgtagccaaaatgaatgaatgaatgaatgaatgaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 456 tgaagagatttttaaaagtagcccatgtagccaaaatgaatgaatgaatgaatgaa---- 511

                                                                       
Query: 317 tgaatgaacaaacgaacgaatgaataaatacatggtataaagagattgcttatcaatgcg 376
                   |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 512 --------caaacgaacgaatgaataaatacatggtgtaaagagattgcttatcaatgcg 563

                                                                       
Query: 377 ggtgtgttcaggtccccagtgtaataaactgtgatgcttgacatatggcttcttatttga 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtgtgttcaggtccccagtgtaataaactgtgatgcttgacatatggcttcttatttga 623

                                                                       
Query: 437 agttttttttttcccctgacagagaataaattattttttatttttcttttcatttcttcc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agttttttttttcccctgacagagaataaattattttttatttttcttttcatttcttcc 683

                                                                       
Query: 497 cttttcttgtctgtctgtctgtcgtttcttttctttctttcttt-ttcctttcctttttt 555
           |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |
Sbjct: 684 cttttcttgtctgtctgtctgtcgtttcttttctttctttctttctt--tttccttttct 741

                                                                  
Query: 556 ttttttttttttttggagacagatttctttacatagccctggatgttctggaatt 610
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttttttttttttttggagacagatttctttacatagccctggatgttctggaatt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space:   598800
Effective search space used:   598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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