Query= MSMg01no512_f19.b1 MSMg01no512_f19.b1 CHROMAT_FILE:
MSMg01no512_f19.b1 PHD_FILE: MSMg01no512_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:29 2005
(641 letters)
>mm_chr11_29610425_29611465
Length = 1041
Score = 1183 bits (612), Expect = 0.0
Identities = 630/636 (99%)
Strand = Plus / Plus
Query: 6 aatctgtggattcgtattgatactgctagggaggattttgtgtctgaaactgagggactt 65
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatctgtggatgcgtattgatactgctagggaggattttgtgtctgaaactgagggactt 265
Query: 66 ggttgattttaatgttaaagcagtgtgtgaggtatttaccgagaataagttgaaacatat 125
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 266 ggttgattttaatgttaaagcagtgtgtgaggtatttgccgagaataagttgaaacatat 325
Query: 126 ttggcaaagtaactgtgaaattattccaactagaggaagcaagggcagtgtgttaagagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttggcaaagtaactgtgaaattattccaactagaggaagcaagggcagtgtgttaagagt 385
Query: 186 ttactctgggctttgtgacagcaatctaggcaagtgcattatttattgagctataccctt 245
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 ttactcagggctttgtgacagcagtctaggcaagtgcattatttattgagctataccctc 445
Query: 246 tgcccagtgactttcaatgtgctaaatagtctggatatgggatcagagaatgtaacaggt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcccagtgactttcaatgtgctaaatagtctggatatgggatcagagaatgtaacaggt 505
Query: 306 cttatttgaggtagttctgttttgttacatgggccagtagaaggacagtgagccaagaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttatttgaggtagttctgttttgttacatgggccagtagaaggacagtgagccaagaga 565
Query: 366 gttgagaataataggaatgaagtagtttgaagtcattgaaatgatgggctggcatccagg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gttgagaataataggaatgaagtagtttgaagtcattgaaatgatgggctggcatccagg 625
Query: 426 ttgaagtgaataggaagttgatagaaagagagtagtagatgaagtgaattgtaggtccag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgaagtgaataggaagttgatagaaagagagtagtagatgaagtgaattgtaggtccag 685
Query: 486 attaggtctaagaaccaaaagtgttaggaagaaaaatgtgactcttagaatgttttggga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attaggtctaagaaccaaaagtgttaggaagaaaaatgtgactcttagaatgttttggga 745
Query: 546 aacatagtaagatgtatgtgttgggtattgagtttagaattttactgcaaaagcagctcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aacatagtaagatgtatgtgttgggtattgagtttagaattttactgcaaaagcagctcc 805
Query: 606 gtgaccaaggtttggccattaagaaagttgctgagg 641
| ||||||||||||||||||||||||||||||||||
Sbjct: 806 gagaccaaggtttggccattaagaaagttgctgagg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_f19.g1 MSMg01no512_f19.g1 CHROMAT_FILE:
MSMg01no512_f19.g1 PHD_FILE: MSMg01no512_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:29 2005
(610 letters)
>mm_chr11_29676922_29677932
Length = 1011
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Minus
Query: 1 acaaaaaacctacgggcctgactcttttgatgtcagagagacatggaaacaaatggttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 acaaaaaacctacgggcctgactcttttgatgtcagagagacatggaaacaaatggttta 752
Query: 61 tattttcttagctctcaaatccacctcaaaaatacctgttgaagacctactgtgagccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tattttcttagctctcaaatccacctcaaaaatacctgttgaagacctactgtgagccag 692
Query: 121 tcttaaggggagaccattcacggcctgcatggagcatgtattctcatgatacaagcaaaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 691 tcttaaggggagaccattcacggcctgcatggagcatgtattgtcatgatacaagcaaaa 632
Query: 181 ttagaaaactgaaaatgaacagttttgttacatcctagataacagcaaagacaacaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttagaaaactgaaaatgaacagttttgttacatcctagataacagcaaagacaacaggaa 572
Query: 241 tgattaggcactgactggtaactgccactttttggctttatttgcagggacagcatgcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgattaggcactgactggtaactgccactttttggctttatttgcagggacagcatgcaa 512
Query: 301 gatttaagaaatatgtggggcacagcgcacacgttaccaatgtgaggtggctacacaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gatttaagaaatatgtggggcacagcgcacacgttaccaatgtgaggtggctacacaatg 452
Query: 361 actctgtgctgctcactgtaggaggtgctgacacagccttgatgatctggaccagggaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actctgtgctgctcactgtaggaggtgctgacacagccttgatgatctggaccagggaat 392
Query: 421 ttgtggggacgcaggagagcaagctggttgatagtgaggagtcagacacagatgcagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttgtggggacgcaggagagcaagctggttgatagtgaggagtcagacacagatgcagaag 332
Query: 481 aagatggaggtgagccccaatcagccatgtgttgtccattatgatggtac-ttttttttt 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 aagatggaggtgagccccaatcagccatgtgttgtccattatgatggtactttttttttt 272
Query: 540 tctggtatcctcctgaacacttgaaaaccatctcatacccccaatctctttctgttgttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctggtatcctcctgaacacttgaaaaccatctcatacccccaatctctttctgttgttt 212
Query: 600 gaggctatgac 610
|||||||||||
Sbjct: 211 gaggctatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
