Query= MSMg01no512_f20.b1 MSMg01no512_f20.b1 CHROMAT_FILE:
MSMg01no512_f20.b1 PHD_FILE: MSMg01no512_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:29 2005
(631 letters)
>mm_chr11_4888189_4889217
Length = 1029
Score = 1108 bits (573), Expect = 0.0
Identities = 613/627 (97%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagcttcccttttgccttagactcccaagttctaggattgattacagagctga 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagcagcccttttgccttagactcccaagttctaggattgattacagagctga 264
Query: 65 accaccacacccagctagctcttctgtctgtctgtctgtctgtctgtcatgagctctgtg 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaccacacccagctagctcctctgtctgtctgtctgtctgtctgtcatgagctctgtg 324
Query: 125 atgtttttctagtcccattggattcacagaaacttaatagtgtcaccttatccctatcct 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 atgtttttctagtcccattggattcacagaaacttaataatgtcaccttatccctatcct 384
Query: 185 tccaagggataattgaagataaagcaacttgtaggggcataaacagaggcctgcgtctta 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 tccaagggataattgaagataaagcaacttgtaggggcataaacagaggtctgcgtctta 444
Query: 245 ggaactgtcaagagggctttgctagtccccaagaatcagaccttccgtgtctctgtagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaactgtcaagagggctttgctagtccccaagaatcagaccttccgtgtctctgtagag 504
Query: 305 atcatctgatgagtgtgggttgactgaaagcttcacaccgggtagtctgaagggctcaga 364
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 505 atcatctgatgagtgtgggttgactggaagcttcacaccgagtagtctgaagggctcaga 564
Query: 365 gctccagaggaatgagcactctgactccctgccagtcagctcctggctctagccccaggt 424
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtccagaggaatgagcactc--actccctgccagtcagctcctggctctagccccaggt 622
Query: 425 cagcagcttcccagttgtgtgacctggataactcaacttcagctgggtttctatcctaat 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 cagcagcttcccagttgtgtgacctggataactcaacttcagcagggtttctatcctaat 682
Query: 485 aaaatatgtagataaggtggtagagcacttccccagcgtttgcaaggctggtttctatcc 544
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 aaaatatgtagatacggtggtagagcacttccccagcgtttgcaaggctggtttctattc 742
Query: 545 ccagcaccaagaaaaataagggttttggggagacgtggtggtccatgcctgcagccccag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccagcaccaagaaaaataagggttttggggagacgtggtggtccatgcctgcagccccag 802
Query: 605 tcagcactcataaagctgggctgggag 631
|||||||||||||||||| ||||||||
Sbjct: 803 tcagcactcataaagctgagctgggag 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1029
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1019
Effective search space: 632799
Effective search space used: 632799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_f20.g1 MSMg01no512_f20.g1 CHROMAT_FILE:
MSMg01no512_f20.g1 PHD_FILE: MSMg01no512_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:29 2005
(512 letters)
>mm_chr11_4953946_4954857
Length = 912
Score = 607 bits (314), Expect = e-178
Identities = 320/322 (99%)
Strand = Plus / Minus
Query: 1 cagttccggcccagcctggctctgctcagagaggagggagaagggacccaggaaagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 cagttccggcccagcctggctctgctcagagaggagagagaagggacccaggaaagcagg 263
Query: 61 agaattagggcaggcacaaggttcctggttaatccccagtgtggaagaaatgaataaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaattagggcaggcacaaggttcctggttaatccccagtgtggaagaaatgaataaagg 203
Query: 121 aatttttttgtttatttgtttgtttgttttttgtttttgttttttgttcaagacagggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatttttttgtttatttgtttgtttgttttttgtttttgttttttgttcaagacagggtt 143
Query: 181 tctccgtgtagccccagctgtcctggaactcactctgtagaccaggctggcctcgaaccc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tctcggtgtagccccagctgtcctggaactcactctgtagaccaggctggcctcgaaccc 83
Query: 241 agaaatccacctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 agaaatccacctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcc 23
Query: 301 cggcaatgaattttatttatgt 322
||||||||||||||||||||||
Sbjct: 22 cggcaatgaattttatttatgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
