BAC Information

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BAC

Clone NameMSMg01-512H02
Chromosome11 (Build37)
Map Location 50,443,903 - 50,628,433
singlet/doubletdoublet
Overlap geneAdamts2, Zfp354c
Upstream geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream gene9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512H02.T7 (MSMg01no512_h02.b1)MSMg01-512H02.TJ (MSMg01no512_h02.g1)
ACCAG585401AG585402
length744739
length of high quality
(start - end)		466 (41 - 506)464 (70 - 533)
definitionCHROMAT_FILE: MSMg01no512_h02.b1 PHD_FILE: MSMg01no512_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:36 2005CHROMAT_FILE: MSMg01no512_h02.g1 PHD_FILE: MSMg01no512_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,628,071 - 50,628,433)(50,443,903 - 50,444,362)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATACTGGACAGAAACCGTATCAATGCAACGAATGTGGGAAGACTTTCAAC
CAGTATTCCTCCTTCAATGAACATCGGAAGATTCATACCGGGGAGAAACT
TTACACATGTGAAGAATGTGGGAAAGCCTTTGGCTGTAAATCAAACCTTT
ATCGGCATCAGAGGATCCATACTGGAGAGAAACCCTATCAGTGTAACCAG
TGTGGAAAGGCCTTCAGCCAGTATTCATTCCTAACTGAACACGAGCGAAT
CCATACTGGAGAGAAGCTCTACAAGTGTATGGAGTGTGGGAAAGCCTATA
GTTACAGGTCAAACCTTTGTAGACACAAAAAAGTCCACCTTAAGGAAAGG
CTGTATAAATGGAAAGAATATGGGACACCCTTTATCTATGGCTCATCCCT
TACTCCATATCAGAAATTTCTGAAAGGAGACAAGCCTGAGAACTTTAATT
CATCGCTGTGATCCAAGACAGCAACCAGAAGAGTAGTGAGTAGAATGCAC
ATCCAAATAGAGTCATCTTTTTTATCTGTACAGTAAATATGTACCACTAG
TCATGGACAGTGGATGCACAAAGAATGCTGACATCTCCAATTTCAGGACT
ATTACATACAATGTTTAAAATTTCCACAAAAATTTTGATAGGCCCTCTTT
TTCAAACACCGCGCACGAGTAACCGTTGCCTATAATCCCTGTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGGTGAGACACATCTGAAGGGTCCAATATG
CCAGCCCCGGGTGTAAGGAAGGCATCTTTGGGAGGCAGTGACCTCCTAAA
GGAAGCAAGCCCAAGCCAGACATACCCACACGGTGTGAGATTGTTCTTGA
TTCTACAGCTGGGACTTGCCCTGCCACCAGGTCCCCTCACCTCAGGATGC
CATACCACTGGGTGGGTGTAGCCAATGTCCCTGCTGAGGGAACACAGCTA
TCCTCCAATGGCAGCCTCTGTCACTGACCTCAGGGACTTCCGCTTTCATC
AGGTGTCACTTGGGTTTCAGTTCTTGTCTCTTCTGGGCGGCCTGACTCCC
TCTCCCCAGGGGTGTCGCCTCTCAAGATCCTAGACCTTGGTGTCCATCTG
ATACTCTTCTCTTTGTAGGAACCTGCTCTTTCCCTCTGGGAGCCTTTAGA
ACACTGTCTTTGATATATCCCTGTGTTTGATTGTAGTTTAAACAAAGTCC
AGGTATGATCACTTTCTTAGCAATTGGGAGGACCCCTGAATTCCACCGAT
GCTGAAATATTTCAACCAGTCTTGAGACCTTTTTGGCCCTCTTTTTTTTT
TTCCTTTTAAAATGGTTTCCTCCCAATAACTCCTCCCTTCTGGGGTCTCT
TCTTTTGGCCTAAACTTCTCCTTGAACCATCTTTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_h02.b1 MSMg01no512_h02.b1 CHROMAT_FILE:
MSMg01no512_h02.b1 PHD_FILE: MSMg01no512_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:36 2005
         (466 letters)



>mm_chr11_50627568_50628433
          Length = 866

 Score =  702 bits (363), Expect = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Minus

                                                                       
Query: 104 agaaactttacacatgtgaagaatgtgggaaagcctttggctgtaaatcaaacctttatc 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agaaactttacacatgtgaagaatgtgggaaagcctttggctgtaaatcaaacctttatc 807

                                                                       
Query: 164 ggcatcagaggatccatactggagagaaaccctatcagtgtaaccagtgtggaaaggcct 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggcatcagaggatccatactggagagaaaccctatcagtgtaaccagtgtggaaaggcct 747

                                                                       
Query: 224 tcagccagtattcattcctaactgaacacgagcgaatccatactggagagaagctctaca 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcagccagtattcattcctaactgaacacgagcgaatccatactggagagaagctctaca 687

                                                                       
Query: 284 agtgtatggagtgtgggaaagcctatagttacaggtcaaacctttgtagacacaaaaaag 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agtgtatggagtgtgggaaagcctatagttacaggtcaaacctttgtagacacaaaaaag 627

                                                                       
Query: 344 tccaccttaaggaaaggctgtataaatggaaagaatatgggacaccctttatctatggct 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tccaccttaaggaaaggctgtataaatggaaagaatatgggacaccctttatctatggct 567

                                                                       
Query: 404 catcccttactccatatcagaaatttctgaaaggagacaagcctgagaactttaattcat 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catcccttactccatatcagaaatttctgaaaggagacaagcctgagaactttaattcat 507

              
Query: 464 cgc 466
           |||
Sbjct: 506 cgc 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_h02.g1 MSMg01no512_h02.g1 CHROMAT_FILE:
MSMg01no512_h02.g1 PHD_FILE: MSMg01no512_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:36 2005
         (464 letters)



>mm_chr11_50443699_50444562
          Length = 864

 Score =  843 bits (436), Expect = 0.0
 Identities = 454/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgagacacatctgaagggtccaatatgccagccccgggtgtaaggaaggcatctttggga 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 205 tgagacacatctgaagggtccaatatgccagccctgggtgtaaggaaggcatctttgggg 264

                                                                       
Query: 65  ggcagtgacctcctaaaggaagcaagcccaagccagacatacccacacggtgtgagattg 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagtgacctcccaaaggaagcaagcccaagccagacatacccacacggtgtgagattg 324

                                                                       
Query: 125 ttcttgattctacagctgggacttgccctgccaccaggtcccctcacctcaggatgccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttgattctacagctgggacttgccctgccaccaggtcccctcacctcaggatgccat 384

                                                                       
Query: 185 accactgggtgggtgtagccaatgtccctgctgagggaacacagctatcctccaatggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accactgggtgggtgtagccaatgtccctgctgagggaacacagctatcctccaatggca 444

                                                                       
Query: 245 gcctctgtcactgacctcagggacttccgctttcatcaggtgtcacttgggtttcagttc 304
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 gcttctgtcactgacctcagggacttcctctttcatcaggtgtcacttgggtttcagttc 504

                                                                       
Query: 305 ttgtctcttctgggcggcctgactccctctccccaggggtgtcgcctctcaagatcctag 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgtctcttctgggcagcctgactccctctccccaggggtgtcgcctctcaagatcctag 564

                                                                       
Query: 365 accttggtgtccatctgatactcttctctttgtaggaacctgctctttccctctgggagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accttggtgtccatctgatactcttctctttgtaggaacctgctctttccctctgggagc 624

                                                   
Query: 425 ctttagaacactgtctttgatatatccctgtgtttgattg 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttagaacactgtctttgatatatccctgtgtttgattg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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