Query= MSMg01no513_h16.b1 MSMg01no513_h16.b1 CHROMAT_FILE:
MSMg01no513_h16.b1 PHD_FILE: MSMg01no513_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(685 letters)
>mm_chr11_3322106_3323190
Length = 1085
Score = 990 bits (512), Expect = 0.0
Identities = 574/622 (92%), Gaps = 42/622 (6%)
Strand = Plus / Minus
Query: 1 cagggctacacagagaaacccagcctcataacaaacaaagaaacagagttttgtgtgccc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagggctacacagagaaacccagtctcataacaaacaaagaaacagagttttgtgtgccc 521
Query: 61 aatctcctttaagcttcatataaatccatgcagagggcatagttgagagacagatatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aatctcctttaagcttcatataaatccatgcagagggcatagttgagagacagatatatg 461
Query: 121 tagtgtccaggggcacaaacagaaccgaaacccaatctgggtgctactgaagtcctgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tagtgtccaggggcacaaacagaaccgaaacccaatctgggtgctactgaagtcctgctc 401
Query: 181 ttgactgctagatagtctccctttaccttcttacgctctgcttgctcaaccagcattagc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgactgctagatagtctccctttatcttcttacgctctgcttgctcaaccagcattagc 341
Query: 241 aagcaacaggaatcagaggcctcaggaagccagaggctttggccttggtggctgagggcg 300
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagcaacagaaatccgaggcctcaggaagccagaggctttggccttggtggctgagggca 281
Query: 301 ctcctctggatcctaagcaccggcagctgctactaatctagtttgcttgcttgcttgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcctctggatcctaagcaccggcagctgctactaatctagtttgcttgcttgcttgtgt 221
Query: 361 gtttcctttcttcctcctaatttctttctttctttctttctttctttctttctttctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtttcctttcttcctcctaatttctttctttctttctttctttctttctttctttctttc 161
Query: 421 tttctttctttctttctttctttctttctttctttctttctttctttctttctctttctt 480
||||||||||||||||||||
Sbjct: 160 tttctttctttctttctttc---------------------------------------- 141
Query: 481 tcatttttcttttgatggctttatttcagggaatatctggcttattaatcagcgactgac 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140 --atttttcttttgatggctttatttcagggaatttctggcttattaatcagcgactgac 83
Query: 541 caactcttcctcgttccagtttgcaacggctagtgccctaagcacattgaaagcacatag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 caactcttcctcgttccagtttgcaacggctagtgccctaagcacattgaaagcacatag 23
Query: 601 ttccttaatttctttcttctca 622
||||||||||||||||||||||
Sbjct: 22 ttccttaatttctttcttctca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_h16.g1 MSMg01no513_h16.g1 CHROMAT_FILE:
MSMg01no513_h16.g1 PHD_FILE: MSMg01no513_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(606 letters)
>mm_chr11_3162694_3163699
Length = 1006
Score = 1104 bits (571), Expect = 0.0
Identities = 598/607 (98%), Gaps = 7/607 (1%)
Strand = Plus / Plus
Query: 1 atctgccaggcagtggcaacatatgcctttgccccagcactcaggagacagaggcagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atctgccaggcagtggcaacatatgcctttgccccagcactcaggagacagaggcagatg 265
Query: 61 gatctcagaacagccagggatacagagaaaccaagtctccaaaaagaaaaaagaaaaaaa 120
|||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||
Sbjct: 266 gatctcagaacagccagggatacagagaaaccaa-tct-caaaaa-aaaaaa-aaaaaaa 321
Query: 121 gaaagaaagaagagaaaaggaaagagaa-tgaaggaggagaaagaggaggggctgaaggt 179
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 322 -aaagaaagaagagaaaaggaaagagaagt-aaggaggagaaagaggaggggctgaaggt 379
Query: 180 tatgaggcatagtagagcaagcctgtagtcacagcacttggaaggtaaaaagcagaggaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatgaggcatagtagagcaagcctgtagtcacagcacttggaaggtaaaaagcagaggaa 439
Query: 240 gcagaaatttaggggccagcttggactaagatcctttctcaaaaacataaaaccctgggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagaaatttaggggccagcttggactaagatcctttctcaaaaacataaaaccctgggg 499
Query: 300 ctggagcgctgattgctcttgcagaggacgagactcaatccctagcactcacatcacagc 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctggagcactgattgctcttgcagaggacgagactcaatccctagcactcacatcacagc 559
Query: 360 tagcaagcttctctaactgcagtctcagggtccctgagggatacagtatgctcttctggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagcaagcttctctaactgcagtctcagggtccctgagggatacagtatgctcttctggc 619
Query: 420 ctccaggggtgcttcataggtgatacaaagatacacacaggcaaaacacatacacaaaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctccaggggtgcttcataggtgatacaaagatacacacaggcaaaacacatacacaaaat 679
Query: 480 agcataggggttggagatggctcttcacaaagcatgcatacttatttcttagcatgcgca 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 agcataggggttggagatggctcttcacaaagcatgcatgcttatttcttagcatgcgca 739
Query: 540 gctacacatgcagttccaagggattttactccttctgggctctgaaagcactggtgcaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctacacatgcagttccaagggattttactccttctgggctctgaaagcactggtgcaca 799
Query: 600 tacaatt 606
|||||||
Sbjct: 800 tacaatt 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
