Query= MSMg01no513_i18.b1 MSMg01no513_i18.b1 CHROMAT_FILE:
MSMg01no513_i18.b1 PHD_FILE: MSMg01no513_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:04 2005
(664 letters)
>mm_chr11_75837048_75838111
Length = 1064
Score = 1253 bits (648), Expect = 0.0
Identities = 660/664 (99%)
Strand = Plus / Plus
Query: 1 taagtgctgcttctagaaggttggctatagccatgatctcagtgcttggcccacttcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgctgcttctagaaggttggctatagccatgatctcagtgcttggcccacttcaac 260
Query: 61 tatggtttgggaacttcccaactttgggagaccctgagacctgagccaatcactgaaagc 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggtttgggaacctcccaactttgggagaccctgagacctgagccaatcactgaaagc 320
Query: 121 cagctacaaccccagtgccatttgcatcccttagttgctgcatcatcaccgtcatcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctacaaccccagtgccatttgcatcccttagttgctgcatcatcaccgtcatcatct 380
Query: 181 tattattttggagcaaggttttgcaaagtagagcagcctaggctggagtcccccatgctc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tattattttggagcaaggttttgcaaagtagagcaacctaggctggagtcccccatgctc 440
Query: 241 cagcctcagcctcccgagggctggctgggactgtaggtatacacaccattcatggctgag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcctcagcctcctgagggctggctgggactgtaggtatacacaccattcatggctgag 500
Query: 301 ggggttcatatgttctgaaagcagcgcagtgacgacttgggcgcattcatattgcagctt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ggggttcatatgttctgaaagcagcgcagtgacgacttgggcgcattcgtattgcagctt 560
Query: 361 cacagatatcagcatctcgacaagcgttgcgtgagtgtgaaccagctttgtgtctttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagatatcagcatctcgacaagcgttgcgtgagtgtgaaccagctttgtgtctttctc 620
Query: 421 cccagagtcacaagactctgatgggagctaatgtcacaaagtcatgtcccagttttgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccagagtcacaagactctgatgggagctaatgtcacaaagtcatgtcccagttttgtca 680
Query: 481 gaaatacaagctccaggggaataaaagcctaacctgctcacctctaaatgggtgagcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaatacaagctccaggggaataaaagcctaacctgctcacctctaaatgggtgagcctc 740
Query: 541 cctctgttccttatcaaaggctcctttgtgctcaagcaactgaaactgcagctacaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctctgttccttatcaaaggctcctttgtgctcaagcaactgaaactgcagctacaaaat 800
Query: 601 ccccagtcaccaaaagtaaaattcctttccctaaaaagacagctctttgcgggaacgtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccccagtcaccaaaagtaaaattcctttccctaaaaagacagctctttgcgggaacgtct 860
Query: 661 ccac 664
||||
Sbjct: 861 ccac 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_i18.g1 MSMg01no513_i18.g1 CHROMAT_FILE:
MSMg01no513_i18.g1 PHD_FILE: MSMg01no513_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:04 2005
(634 letters)
>mm_chr11_75993390_75994425
Length = 1036
Score = 1174 bits (607), Expect = 0.0
Identities = 629/639 (98%), Gaps = 8/639 (1%)
Strand = Plus / Minus
Query: 1 atcaggcttgagggcaaatgctctactggctgagccatcttgatgtctctctcacactcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 836 atcaggcttgagggcaaatgctctactggctgagccatcttgatg--tctctcacagtcc 779
Query: 61 tcctgcaattatatttttaagcattcttttgttgctgttgctaaaacttatactactcac 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tcctgcaattatattttaaagcattcttttgttgctgttgctaaaacttatactactcac 719
Query: 121 acatttttggggggcaaactaaaacaacaataaaattccattcctaaaactataatgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acatttttggggggcaaactaaaacaacaataaaattccattcctaaaactataatgttt 659
Query: 181 tttaaaaact--aaaaaaaaaagcaaattatattattcctgaagcaatttttataaaact 238
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tttaaaaactaaaaaaaaaaaagcaaattatattattcctgaagcaatttttataaaact 599
Query: 239 atatgtacgg---aaaaaaaaaaagttcagcagggccagatactcctctgtcgaggtttt 295
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atatgtacggaaaaaaaaaaaaaagttcagcagggccagatactcctctgtcgaggtttt 539
Query: 296 cacaatgttgaactggtaaggcaacccttcccttggctgcaattccatcattgttccagt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cacaatgttgaactggtaaggcaacccttcccttggctgcaattccatcattgttccagt 479
Query: 356 gcctgctggaaaagcggttccacagggctatctggctcctctttttgtaatgtacgcggc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcctgctggaaaagcggttccacagggctatctggctcctctttttgtaatgtacgcggc 419
Query: 416 taaacaccctaacatttcctgtactacctgcctaagtttgcataatacttccatatttaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taaacaccctaacatttcctgtactacctgcctaagtttgcataatacttccatatttaa 359
Query: 476 tgctcaccccatctaacgtagtgtaagcagggcagatgggaatactttgttcaagatcat 535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tg-tcaccccatctaacgtagtgtaagcagggcagatgggaatactttgttcaagatcat 300
Query: 536 aaggttatcaagggtgtaaataaggatgtacagcccggacattcggtctcaaaaaccaaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaggttatcaagggtgtaaataaggatgtacagcccggacattcggtctcaaaaaccaaa 240
Query: 596 cacttcccagcgttgggtcgcttttctccttactcccca 634
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cacttcccagcgttgggtcgcttttctccttactcccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1036
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1026
Effective search space: 640224
Effective search space used: 640224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
