Query= MSMg01no513_k03.b1 MSMg01no513_k03.b1 CHROMAT_FILE:
MSMg01no513_k03.b1 PHD_FILE: MSMg01no513_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:11 2005
(450 letters)
>mm_chr11_36851827_36852676
Length = 850
Score = 828 bits (428), Expect = 0.0
Identities = 442/447 (98%)
Strand = Plus / Plus
Query: 4 ggaattcaactggacacggatggaattctaaacatgctgatctaaatattctgaaacaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactggacacggatggaattctaaacatgctgatctaaatattctgaaacaat 263
Query: 64 atagcacgccgatttctcatattccctaacaaaaccaaaccaaagagctgtatgttgttc 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atagcacaccgatttctcatattccctaacaaaaccaaaccaaagagctgtatgttgttc 323
Query: 124 tatgtgaggttgtgtaatgaacaatgaagcctgtcttctattacagatggaaatgatgtg 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgtgaggttgtgtaatgaacaatgaagcctgtcttctattacagatggaaatgatgtg 383
Query: 184 gacatttaaaacccctctgatttagttccatgcagaatacacttagagaggccttacttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacatttaaaacccctctgatttagttccatgcagaatacacttagagaggccttacttt 443
Query: 244 acactacaacactttctcctacatattgagacaaaagtgtatttagatcattcgagcttc 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acactacaacactctctcctacatattgagacaaaagtgtatttagatcattcgagcttc 503
Query: 304 ccacagtgacatgtctattagcccagctgacctaattgtaggacgtgtgaacaataaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccacagtgacatgtctattagcccagctgacctaattgtaggacgtgtgaacaataaaac 563
Query: 364 aaccacagcacactttcacaccacaccccaaaacacaacgagctgctcttagaaaaccag 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 564 aaccacagcacactttcacaccacaccccaaaacacaacaagctgctcttagaaaaccag 623
Query: 424 agagttgaacagatganaagtttcaaa 450
|||||||||||||||| ||||||||||
Sbjct: 624 agagttgaacagatgaaaagtttcaaa 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_k03.g1 MSMg01no513_k03.g1 CHROMAT_FILE:
MSMg01no513_k03.g1 PHD_FILE: MSMg01no513_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:11 2005
(627 letters)
>mm_chr11_37024362_37025388
Length = 1027
Score = 986 bits (510), Expect = 0.0
Identities = 540/556 (97%), Gaps = 11/556 (1%)
Strand = Plus / Minus
Query: 78 ataccaagtcagcataaataaatgaaagagtgaataaataaataaatgagtgaattcaat 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ataccaagtcagcataaataaatgaaagagtgaataaataaataaatgagtgaattcaat 968
Query: 138 gaataaataaatcaattctaaaggtcaacaaaatgtcggcaaagcaagtcattaaggaaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 967 gaataaataaatcaattctaaaggtcaacaaaatgtcggcaaagcaagtcattaagg-aa 909
Query: 198 aaaataaatcaaggggta----------tttttttaacacaaccaagggcctaataagga 247
|| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 908 aatataaatcaaggggtattgttttttttttttttaacacaaccaagggcctgataagga 849
Query: 248 tgttttaataattattattattttagaaatcagagtctctttattaccttactgtcccca 307
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 848 tgttttaataattattattcttttagaaatcagaatctctttattaccttactgtcccca 789
Query: 308 aggcaatgcagcaatacaagatggggactacagagtcttccttcttctctgtcctccagt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aggcaatgcagcaatacaagatggggactacagagtcttccttcttctctgtcctccagt 729
Query: 368 attccttccagccatgtacaggagattcctggaatgctcagagtggcaccttgaggatag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 attccttccagccatgtacaggagattcctggaatgctcagagtggcaccttgaggatag 669
Query: 428 gcagtgtcagcgatgtagagaagccatcagctttcccccttcaacctgggtatcaaattc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcagtgtcagcgatgtagagaagccatcagctttcccccttcaacctgggtatcaaattc 609
Query: 488 ttgcatttcactagtctcccagtaaagggaatgttggcatggatggagacctatcagaac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgcatttcactagtctcccagtaaagggaatgttggcatggatggagacctatcagaac 549
Query: 548 agactttagaggatcagctaagttttaaacataatgatgggttatggttgttttaccatc 607
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 548 agactttagaggatcagctaagttttaaacataataatgggttatggttgttttaccatc 489
Query: 608 ttggactttttttttt 623
||||||||||||||||
Sbjct: 488 ttggactttttttttt 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
