BAC Information

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BAC

Clone NameMSMg01-513P03
Chromosome11 (Build37)
Map Location 93,749,290 - 93,899,616
singlet/doubletdoublet
Overlap geneMbtd1, Nme2, Nme1, Spag9, LOC100039431
Upstream geneLOC100039286, Car10, LOC629636, Utp18
Downstream geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513P03.T7 (MSMg01no513_p03.b1)MSMg01-513P03.TJ (MSMg01no513_p03.g1)
ACCAG586546AG586547
length764758
length of high quality
(start - end)		714 (36 - 749)599 (66 - 664)
definitionCHROMAT_FILE: MSMg01no513_p03.b1 PHD_FILE: MSMg01no513_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:38 2005CHROMAT_FILE: MSMg01no513_p03.g1 PHD_FILE: MSMg01no513_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,898,993 - 93,899,616)(93,749,290 - 93,749,887)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGA
CAGCTAGGGCTACACAGAGAGAACCTGTCTTAAAAACCCAATCCAAAAAA
ACCAAACAAAGCTAAAATTAGGTATAACATAAGACAGGATGAGAAGAGAG
AAAATGGCCAAGGGAGGTGGCACACACCTTTAATCCCAGAATTGGAGGCA
GAGGTAAAATCATATTATACTCAAGGCCAGCCTGGTTTGCATAGTGTATT
CCAGGCAAGCCAGGGCTACAGAAAGAAGGAGAGGGAAGAGGGGAGGACTG
TAAAATTAACTAAGGTATGTGAATCCCAGACTGACCATAACACACAGGGA
CAAACGACACATTGACAAGACAGAAACAAATACAGTATGTTAAAGACTAA
CAGACTCTTAAAAACAAGGGTTACAAAGGGATTATATGCTACAAATACTA
ATTTAAAATACTAAAGAGGGCTGGAGAGTTGGCTCAGCAGTTAAAAAACC
TGGACCTAGGTTCAGTTGCCAGCATTCATGAGGAAGCTAACAACCATCTG
TAATTCAGTTCTAGAGGAGCCGATGCCCTCTTCTGGCCTCTGTAGTCACG
GCACTTACAAGCAGATAGGACATTCATACACAAAAAATAAAAATCTAAAA
GTTAATAAATAAATCTCAAAAAACTAAAATGCTGAAAATTGGAATCATTT
AAACACATTTTAATGTATTATAAATTTGATATAATTTAATATAAAACATA
ACATAATATAAACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTAGACTTGAAATGCTTGTTACAATTTATTGTTTA
CTTTTGACTTTTTAGTCTTTTTTTTTAATTTATTTATTATATGTAAGTAC
ACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTCTTTACA
GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTT
GGAAGAGCAGTCGGGTACTCTTATCCACTGAGCCATCTCAACAGCCCGAC
TTTTTAATCTTTTATCCCCTTACATTAATATGCACCAAAACTTAGCACTT
AGTAGTTAACTTGCAAATATATATTGGCACCCATTGCTGTGCTTAACTCC
CAGGAGTTGCTCCTGATACTGGTAAAGGAAAGCAAGCGTCTTCCTGTTCC
CCAGTCTGTGGTAGAGGCTGGTGGTTTGCTCTTGTGTGTTTCAGACTGTT
TACCTCACACCAAGGAGTGTTTAGAAAGAAAATAGCTGGCTTTTTGCACT
GTCTCCTCTGAATAACAAATAGCTTCTATTTATATGGAAGCCCATATTGA
AGTATTGCAAATGCCTTGCAGATTAGAGCAGATGCTGTCGCAAATAAGTG
ACTGTTCTTAATGTCTCTGGTGAGCCAGGGTTTCTAGCCATTTTCTTTCA
GGGCTATTCACTAGTGTTTTAGCATTGATTTGAATCCTAGCTGTAAAACT
TAGAGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_p03.b1 MSMg01no513_p03.b1 CHROMAT_FILE:
MSMg01no513_p03.b1 PHD_FILE: MSMg01no513_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:38 2005
         (714 letters)



>mm_chr11_93898753_93899866
          Length = 1114

 Score = 1154 bits (597), Expect = 0.0
 Identities = 618/625 (98%), Gaps = 3/625 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggacagctagggctacacagagagaacctgtcttaaaaacccaatccaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggaattccaggacagctagggctacacagagagaacctgtcttaaaaacccaatccaaaa 805

                                                                       
Query: 64  aaaccaaacaaagctaaaattaggtataacataagacaggatgagaagagagaaaatggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaccaaacaaagctaaaattaggtataacataagacaggatgagaagagagaaaatggc 745

                                                                       
Query: 124 caagggaggtggcacacacctttaatcccagaattggaggcagaggtaaaatcatattat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caagggaggtggcacacacctttaatcccagaattggaggcagaggtaaaatcatattat 685

                                                                       
Query: 184 actcaaggccagcctggtttgcatagtgtattccaggcaagccagggctacagaaagaag 243
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 684 tctcaaggccagcctggtttgcatagtgtattccaggcaagccagggctaaagaaagaag 625

                                                                       
Query: 244 gagagggaagaggggaggactgtaaaattaactaaggtatgtgaatcccagactgaccat 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 gagagggaagaggggaggactgtaaaattcactaaggtatgtgaatcccagactgaccat 565

                                                                       
Query: 304 aacacacagggacaaacgacacattgacaagacagaaacaaatacagtatgttaaagact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacacacagggacaaacgacacattgacaagacagaaacaaatacagtatgttaaagact 505

                                                                       
Query: 364 aacagactcttaaaaacaagggttacaaagggattatatgctacaaatactaatttaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacagactcttaaaaacaagggttacaaagggattatatgctacaaatactaatttaaaa 445

                                                                       
Query: 424 tactaaagagggctggagag-ttggctcagcagttaaaaaacctggacctaggttcagtt 482
           |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 tactaaagagggctggag-gcttggctcagcagttaaaaaccctggacctaggttcagtt 386

                                                                       
Query: 483 gccagcattcatgaggaagctaacaaccatctgtaattcagttctagaggagccgatgcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagcattcatgaggaagctaacaaccatctgtaattcagttctagaggagccgatgcc 326

                                                                       
Query: 543 ctcttctggcctctgtagtcacggcacttacaagcagataggacattcatacacaaaaaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttctggcctctgtagtcacggcacttacaagcagataggacattcatacacaaaaaa 266

                                    
Query: 603 t-aaaaatctaaaagttaataaata 626
           | |||||||||||||||||||||||
Sbjct: 265 taaaaaatctaaaagttaataaata 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no513_p03.g1 MSMg01no513_p03.g1 CHROMAT_FILE:
MSMg01no513_p03.g1 PHD_FILE: MSMg01no513_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:38 2005
         (599 letters)



>mm_chr11_93749090_93750087
          Length = 998

 Score = 1089 bits (563), Expect = 0.0
 Identities = 590/599 (98%), Gaps = 1/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagacttgaaatgcttgttacaatttattgtttacttttgactttttagtctttttttt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttagacttgaaatgtttgttacaatttattgtttacttttgactttttaatctttttttt 260

                                                                       
Query: 61  taatttatttattatatgtaagtacactgtagctgtcttcagacacaccagaagagggcg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 taatttatttattatatgtaagtacactgtagctgtctttagacacaccagaagagggcg 320

                                                                       
Query: 121 tcagatctctttacagatggttgtgagccaccatgtggttgctgggatttgaactccaga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagatctctttacggatggttgtgagccaccatgtggttgctgggatttgaactccaga 380

                                                                       
Query: 181 cctttggaagagcagtcgggtactcttatccactgagccatctcaacagcccgacttttt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttggaagagcagtcgggtgctcttatccactgagccatctcaacagcccgacttttt 440

                                                                       
Query: 241 aatcttttatccccttacattaatatgcaccaaaacttagcacttagtagttaacttgca 300
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aatctttta-ccccttacattaatatgcaccagaacttagcacttagtagttaacttgca 499

                                                                       
Query: 301 aatatatattggcacccattgctgtgcttaactcccaggagttgctcctgatactggtaa 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatatatattggcacccactgctgtgcttaactcccaggagttgctcctgatactggtaa 559

                                                                       
Query: 361 aggaaagcaagcgtcttcctgttccccagtctgtggtagaggctggtggtttgctcttgt 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaaaagcaagcgtcttcctgttccccagtctgtggtagaggctggtggtttgctcttgt 619

                                                                       
Query: 421 gtgtttcagactgtttacctcacaccaaggagtgtttagaaagaaaatagctggcttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgtttcagactgtttacctcacaccaaggagtgtttagaaagaaaatagctggcttttt 679

                                                                       
Query: 481 gcactgtctcctctgaataacaaatagcttctatttatatggaagcccatattgaagtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcactgtctcctctgaataacaaatagcttctatttatatggaagcccatattgaagtat 739

                                                                      
Query: 541 tgcaaatgccttgcagattagagcagatgctgtcgcaaataagtgactgttcttaatgt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcaaatgccttgcagattagagcagatgctgtcgcaaataagtgactgttcttaatgt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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