BAC Information

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BAC

Clone NameMSMg01-514E14
Chromosome11 (Build37)
Map Location 55,294,424 - 55,294,955
singlet/doubletsinglet
Overlap geneG3bp
Upstream geneFnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1
Downstream geneGlra1, Nmur2, LOC100040816, LOC624168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514E14.T7 (MSMg01no514_e14.b1)MSMg01-514E14.TJ (MSMg01no514_e14.g1)
ACCAG586807AG586808
length746776
length of high quality
(start - end)
533 (63 - 595)226 (68 - 293)
definitionCHROMAT_FILE: MSMg01no514_e14.b1 PHD_FILE: MSMg01no514_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:07 2005CHROMAT_FILE: MSMg01no514_e14.g1 PHD_FILE: MSMg01no514_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGGATGCGCGGAATTCTTAA
ACACTCTCGCTTGTGCTTGTCATCTCAGCTCGTAAGAGGCTGAGACAGGA
GGATTGCTGAGTTTAAGGTAATCTACATTTTAAATTACTGTCCGACTAAT
TCACCTTCTTCTCTGAACCATGGATGACACAGCAGCCCTTGAGAACGTGT
TGACATTGCTCTCAAGCGAGTCAACTCTCAATTCTTCCAAGCAGACTGAG
CCTATGTAAAACCCAGCCTGGCCCAGAATTCATTTTCCTCCAGATTTGGC
CTCAATTACTGGATCTATAGGTTATCAGCACTCAATTCTGTCCAACCTAA
AACAATTAAAAACCCCAAAACAATTCAGATTCTTTCCAGAAACAAACCTG
CTCATGGTAACAAATGGAAACAATGCAAATCTGTGAAAATGGAGATGTTC
TATTTAGGAGACCAAACCCCCCTGGAGCTGGAGGCCCCAAGGCTCCTTCC
TTACTCAGCCAGAGCTTCTAATTACACTGTGTCCTCTCCAAAGAGCTTTA
TAGAAATAGCTGCAGCTGGGCGCCTTTAATCCCAGCACTTGGGAGGCAGA
GGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGATTTC
CAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCCAATACCTTATTAAAT
TATTAATAACTTATTTAAAAAGAAAGAAAAAAGTGTAAGATTATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCTTCAAGGAAAAAAAGGAAAGAGACAGAGG
GAGGGAGGAGAAGGGAGAGAGAAGAAGGGGAGAGGAAAGAGGAAGAAAAG
GAAAGGAGGACCAGGGAAAGAAGGAAGGGAGGAAGGGGAAGAGGACAGGA
GGGGAGAAGAGAAGGGAGGGGAGACAGAGATCTAGTCTGACCACTTATAT
GCCTTCTGATGATGGTCCTCCAGACCCTGTGTGTTCTCCAGAGATATTCA
GGGTGCCCTCTCTGCTACATTTCCTTTTGTAGAAGAGCATACTCAGCCCT
TGCCCTCTGTACTGTATCTATAGCTTCCTGCTTGACTTTCCCACCCCCTG
CTTCCACCCCCACCCACACACAGGGAATGGGTGCTGTGTCTTGTCCTTGC
TCCTTGTCCACAAGCACTTCCGTGATGTGGCCACTCCCTGTCTGGTTCTA
CCTCGCTTTTTAGCACAGGACGATGTGCCCTGTACGGCTTGGAAGTATTC
CTCGGGGGTCATGTACCGACGAGTCCTGCCTTGGCCCTTGTTCTGCTGTT
TTCTTTTCGTTCCCATGTTTACCTGAGTGATTCTTTGACCTTTTTGGCTT
TCTTCAAGATCTATATGTCATGTGTTTTTGAGACCCGTGTTTCTTCGTGT
GTGTTACTCCTTTATTTTCTGTTCTTTAACCTTTCCCCCTCTCATGGTGT
GGGTTTTCTCTTTTTTGATCCCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_e14.b1 MSMg01no514_e14.b1 CHROMAT_FILE:
MSMg01no514_e14.b1 PHD_FILE: MSMg01no514_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:07 2005
         (533 letters)



>mm_chr11_55294183_55295114
          Length = 932

 Score =  992 bits (513), Expect = 0.0
 Identities = 528/533 (99%), Gaps = 1/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcttgtcatctcagctcgtaagaggctgagacaggaggattgctgagtttaaggtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 773 gtgcttgtcatctcagctcgtaagaggctgagacaggaggattgccgagtttaaggtaat 714

                                                                       
Query: 61  ctacattttaaattactgtccgactaattcaccttcttctctgaaccatggatgacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctacattttaaattactgtccgactaattcaccttcttctctgaaccatggatgacacag 654

                                                                       
Query: 121 cagcccttgagaacgtgttgacattgctctcaagcgagtcaactctcaattcttccaagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cag-ccttgagaacgtgttgacattgctctcaagcgagtcaactctcaattcttccaagc 595

                                                                       
Query: 181 agactgagcctatgtaaaacccagcctggcccagaattcattttcctccagatttggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agactgagcctatgtaaaacccagcctggcccagaattcattttcctccagatttggcct 535

                                                                       
Query: 241 caattactggatctataggttatcagcactcaattctgtccaacctaaaacaattaaaaa 300
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caactactggatcaataggttatcagcactcaattctgtccaacctaaaacaattaaaaa 475

                                                                       
Query: 301 ccccaaaacaattcagattctttccagaaacaaacctgctcatggtaacaaatggaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccccaaaacaattcagattctttccagaaacaaacctgctcatggtaacaaatggaaaca 415

                                                                       
Query: 361 atgcaaatctgtgaaaatggagatgttctatttaggagaccaaacccccctggagctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atgcaaatctgtgaaaatggagatgttctatttaggagaccaaacccccctggagctgga 355

                                                                       
Query: 421 ggccccaaggctccttccttactcagccagagcttctaattacactgtgtcctctccaaa 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 354 ggccccaaggctccttccttactcagccagaacttctaattacactgtgtcctctccaaa 295

                                                                
Query: 481 gagctttatagaaatagctgcagctgggcgcctttaatcccagcacttgggag 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagctttatagaaatagctgcagctgggcgcctttaatcccagcacttgggag 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space:   482206
Effective search space used:   482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)