Query= MSMg01no514_e23.b1 MSMg01no514_e23.b1 CHROMAT_FILE:
MSMg01no514_e23.b1 PHD_FILE: MSMg01no514_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:09 2005
(621 letters)
>mm_chr11_5508239_5509259
Length = 1021
Score = 913 bits (472), Expect = 0.0
Identities = 605/708 (85%), Gaps = 91/708 (12%)
Strand = Plus / Plus
Query: 5 gaattccaagaaagctatctcaaaacagaaagggaagccaagtttacgctccatatgtgg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagaaagctagctcaaaacagaaagggaagccaagtttacgctccatatgtgg 264
Query: 65 gctcaaattaaagggcccatttcatttccagagcaatgcaaacttcattctgattttagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctcaaattaaagggcccatttcatttccagagcaatgcaaacttcattctgattttagg 324
Query: 125 aatacattagtgtatcatgcacttgcttggttggatcatttcaggcaattgtgggaaggg 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aatacattagtgtatcatgcacttgcttggtcggatcatttcaggcaattgtgggaaggg 384
Query: 185 atgagggaagctggagttatggctgcagattcggctgacttagcgtccctatgctgtggt 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 385 atgagggaagctggagttatggctgcagatttggctgacttagcgtccctatgctctggt 444
Query: 245 gaaacaccacagccaaaacaaactgggggaagagagggtttatttatacttccgcatctc 304
|||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||
Sbjct: 445 gaaacaccacagccaaaacaaactggggcaagaaagggtttatttacacttccacatctc 504
Query: 305 tggtcatcatcaaaggaagtcagggcaagaactcgaacagggcaggaatctggagacagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 tggtcatcatcaaaggaagtcagggcaagaactcgaacagggcaggaatctggaggcagg 564
Query: 365 agctgatgcagaggtca------------------------------------------- 381
|||||||||||||||||
Sbjct: 565 agctgatgcagaggtcacggaggggtgcaggaatctggaggcaggagctgatgcagaggc 624
Query: 382 --tggaggg---------------------------------------------tgctgc 394
||||||| ||||||
Sbjct: 625 catggaggggtacaggaatctggaggcaggagccgatgcagaagtcacggagggtgctgc 684
Query: 395 tgactggcttgctcctcatggcttgctcagcctgctttcttatagaaccaggaccactag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgactggcttgctcctcatggcttgctcagcctgctttcttatagaaccaggaccactag 744
Query: 455 gctaaggatggctccacccacagtgggcagagccctttctcatcaatcaccaattaagaa 514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctaagaatggctccacccacagtgggcagagccctttctcatcaatcaccaattaagaa 804
Query: 515 aagctcctaccttgttttgtattatcatgttagttatcatgcactgaatgtagcaaaac- 573
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagcccctaccttgttttgtattatcatgttagttatcatgcactgaatgtagcaaaaaa 864
Query: 574 tcatcttgagaggaaatttgtatacccagtatctaatcattttaacct 621
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tcatcttgagaggaaatttgtatacccagtatctaatcattttaacct 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_e23.g1 MSMg01no514_e23.g1 CHROMAT_FILE:
MSMg01no514_e23.g1 PHD_FILE: MSMg01no514_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:09 2005
(578 letters)
>mm_chr11_5655498_5656475
Length = 978
Score = 683 bits (353), Expect = 0.0
Identities = 376/387 (97%), Gaps = 6/387 (1%)
Strand = Plus / Minus
Query: 1 tgaactgttcctggggcctctgagtcttggtccactgctgttgacatgagctgcctgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaactgttcctggggcctctgagtcttggtccactgctgttgacatgagctgcctgcct 322
Query: 61 gctgccatccatccatctgtacctgaactgatcttagacctggtctgcctttggccttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgccatccatccatctgtacctgaactgatcttagacctggtctgcctttggccttgg 262
Query: 121 tgctggaactctgcagctttcccttgaacactgtcaacagcagcttctttcccattgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggaactctgcagctttcccttgaacactgtcaacagcagcttctttcccattgtct 202
Query: 181 tagtcactgtaactgaggcaactcgtagaaagcatttcattgggacttttatgcagtttc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 201 tagtcactgtaactgaggcaactcgtagaaagcatttcattgggacttgtatgcaatttc 142
Query: 241 agaagtttagtctgttatcgtcatggtggagagcatggtggcatgcagttcatgtatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agaagtttagtctgttatcgtcatggtggagagcatggtggcatgcagttcatgtatgat 82
Query: 301 tctggagaagttacttagttctacatccagatctgcaggcagcaggattcttccagagcc 360
||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 81 tctggagaagtgacttagttctacgtccagatctgtaggcagcaggattcttccag---- 26
Query: 361 actgactgggcctggcttgggcttttg 387
|||||||||||||||||||||||||
Sbjct: 25 --tgactgggcctggcttgggcttttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
