Query= MSMg01no514_j19.b1 MSMg01no514_j19.b1 CHROMAT_FILE:
MSMg01no514_j19.b1 PHD_FILE: MSMg01no514_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:34 2005
(668 letters)
>mm_chr11_108452459_108453527
Length = 1069
Score = 1245 bits (644), Expect = 0.0
Identities = 662/672 (98%), Gaps = 8/672 (1%)
Strand = Plus / Minus
Query: 5 gaattcaagtagactactaattcctatcaattagtagagtaaacaaaatccaatgatcat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gaattcaagtagaccactaattcctatcaattagtagagtaaacaaaatccaatgatcat 953
Query: 65 aagggattaattagttttgatatagtaccagattaatggagcttaaagtagaattttaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aagggattaattagttttgatatagtaccagattaatggagcttaaagtagaattttaaa 893
Query: 125 aataatgcttatttta-------aaagattcaaatatctttagaaataaatttagtaacc 177
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 892 aataatgcttattttaagatttcaaagattcaaatatctttagaaataaatttagtaacc 833
Query: 178 tgagttacaaatccagttaatgcttttccagatgttaaggacaagcaaattagataaata 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tgaattacaaatccagttaatgcttttccagatgttaaggacaagcaaattagataaata 773
Query: 238 aaaaattaatagtag-ttaaatattctaagagacttttaaaaagataagaacatttgatt 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaaaattaatagtagtttaaatattctaagagacttttaaaaagataagaacatttgatt 713
Query: 297 tttaaagtctaaaatccttccaccatagcttgtgtctaactcccctgctcccacagctag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tttaaagtctaaaatccttccaccatagcttgtgtctaactcccctgctcccacagctag 653
Query: 357 gaaccttcctccaatgttttgtctagcctgggcttactgtcacttgcccccccagctcac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaaccttcctccaatgttttgtctagcctgggcttactgtcacttgcccccccagctcac 593
Query: 417 tctctttatgggttcttgtaactttctagtttccctgcttagaatgctgtgcctcagagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctctttatgggttcttgtaactttctagtttccctgcttagaatgctgtgcctcagagg 533
Query: 477 cctcttggcagctccctcctggtgctccagagacctcccagcagaggtccgaatgatcca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctcttggcagctccctcctggtgctccagagacctcccagcagaggtccgaatgatcca 473
Query: 537 tctatccgtgctgaggaccagactcctgcctgcctatgggcagttcttagcatatttctc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctatccgtgctgaggaccagactcctgcctgcctatgggcagttcttagcatatttctc 413
Query: 597 ttctcctcttgactcactttccagtcacttcaacttttactcacctgttgactgtgtacc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttctcctcttgactcactttccagtcacttcaacttttactcacctgttgactgtgtacc 353
Query: 657 aaaatctacagt 668
||||||||||||
Sbjct: 352 aaaatctacagt 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space: 696822
Effective search space used: 696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j19.g1 MSMg01no514_j19.g1 CHROMAT_FILE:
MSMg01no514_j19.g1 PHD_FILE: MSMg01no514_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:34 2005
(658 letters)
>mm_chr11_108269585_108270644
Length = 1060
Score = 1257 bits (650), Expect = 0.0
Identities = 657/660 (99%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 1 agtttctgacctgcggggaatcaattatcttgcaattaatagtctaaactgactgcgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttctgacctgcggggaatcaattatcttgcaattaatagtctaaactgactgcgtgt 260
Query: 61 tatttccagcagtcaagacccttgatacataggctttggatcatgagtggaagttaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttccagcagtcaagacccttgatacataggctttggatcatgagtggaagttaaagg 320
Query: 121 aaaggcacactattcagggtcacatcacttgcaaagccacaaaggcatgaaaggacttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggcacactattcagggtcacatcacttgcaaagccacaaaggcatgaaaggacttgt 380
Query: 181 gtctagtgacagctggaacaccagtgaggtgtccctggattaagggatgagggttttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctagtgacagctggaacaccagtgaggtgtccctggattaagggatgagggttttaaa 440
Query: 241 aactgggttatagtctgattgatggctatgactttataatctccctacatttaagaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgggttatagtctgattgatggctatgactttataatctccctacatttaagaatca 500
Query: 301 tcgccagtgtctttttaatctggtttattgactagagaaaaaaaaagacttttctccctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgccagtgtctttttaatctggtttattgactagagaaaaaaaaagacttttctccctc 560
Query: 361 ttctttcatatccatattttagattgtagaagtttgtgacaaatgacacttcatgatgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttcatatccatattttagattgtagaagtttgtgacaaatgacacttcatgatgaa 620
Query: 421 aactcaaagcccaaagagctagcagggtatcatttattttcaacgtgtgttttctaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactcaaagcccaaagagctagcagggtatcatttattttcaacgtgtgttttctaaata 680
Query: 481 ttcagagttctatgaatgtaagagagcagggatagaatcaagcatcagggacctagaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcagagttctatgaatgtaagagagcagggatagaatcaagcatcagggacctagaaac 740
Query: 541 tgcatttcgctcacaggatgctcactggctctgtggtgtaagggaaaggcgaaggcattt 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcatttcactcacaggatgctcactggctctgtggtgtaagggaaaggcgaaggcattt 800
Query: 601 tgcaactctcagaaaatgct--gagttactaacatttttcttactgattacatttttcag 658
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcaactctcagaaaatgctatgagttactaacatttttcttactgattacatttttcag 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
