BAC Information

Click to search

BAC

Clone NameMSMg01-516F03
Chromosome11 (Build37)
Map Location 29,253,978 - 29,426,366
singlet/doubletdoublet
Overlap geneLOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream geneMtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516F03.T7 (MSMg01no516_f03.b1)MSMg01-516F03.TJ (MSMg01no516_f03.g1)
ACCAG588346AG588347
length762762
length of high quality
(start - end)		679 (49 - 727)621 (78 - 698)
definitionCHROMAT_FILE: MSMg01no516_f03.b1 PHD_FILE: MSMg01no516_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:59 2005CHROMAT_FILE: MSMg01no516_f03.g1 PHD_FILE: MSMg01no516_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,253,978 - 29,254,652)(29,425,746 - 29,426,366)
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTACTGTTTTTGAGTGTCTGAGACATTTTCATAATAAAA
AGGATAAAAGTAAAATGTATCCGATTCACAAAGCCTTTGAATGTATGTCA
CAGAGGTCTTTAATACAGGTATTAGCAATAGGCCTATTTGATATAAAAAT
TTACTTCTTCTTGTTTTAAAGAAATGTAGTTGTCTCTGGGCTTGTGCTTA
CTTTCCTGTGACATGGTTCCTACACCAAGAGGGGCAGGCTCCTTCGGAAA
TATGAAACAGCTTATAGTGCCTCCCTCTGAAAAATGGTGAAAAGAATTGA
AGTGAGCCAGCAGGTCACATACACTTGCTCCTTCTGTGGCAATACCAAGA
TCAAGAGATGAGCTGTTAGCATCTGGCACTGTGGTTCCTACATGAAAATA
GTGACTGGCAAGTCCTGAACCTACACTGAGGCAGCCACAGTCAAGTCTTC
CACCAGAAGACTGAAGAACCTGAAAGACCAGAAGAAACACTACAGTTTGA
GGCTTGTCTAGCCTTCAATAAGTGGATTAATTTACACAATAACAACACAA
CAACAAAAAATGGGGTTGTATTACTGAGTCTTTTTTGTCTCCACTTAAAA
ATAGATGTAGGCTCTTTTTTCCATGTTGGCTCATTGCACAATAGCCCTGT
TTGCTTCCTCTCCATTAAGCTGGGTTCCAGATAGTCTGTATCTTTGCTGT
ACTTCTTCATGG

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTTGTCTGTGGCTGGTGGAG
GCCGGCTATGGCTGGTCCTGTAACCTGCAGCTTCGGCTGCTGGCCTGCAG
TGGGGACCGGGTGCTCTGCAGTTCCCTCCCTTCTCCAGGAAGGACACGTA
CTTCAAACTTGCGTGTATCTAGCTGGAAGGAAGCGGCGCAAGGTGGCCCT
AGAAAGCTCTAACGGGGTGGGCAGGGTAGGTAGTGGAGCTAGGGTTCTCC
GACTGCTGGCCCAGCCCGTTCACAGTGTGAACTTAGAGGTGTGTTGTCAA
CTCTGTGCCTCGACTTTATCTGTTGTATGGAATCACGGTACGGACTTCAT
AAGATCGTGGGAAGGTTTCAGTGACTTGTTGAGAGTACGAGTCAAGTAAA
CGTTTTTCGTTATGATTTTCGTTGTTTTTCTTCACTTTGGAGTTTTTCCT
GTCTCCTCTTTGGCCACAGCCATCATCATCTCTTGAGGGTAACTCGTTTA
CACCTAGCACTACCACAGATTAAGGGAATAGCATAGAAAAGTTTCTTATC
CCAAAGCACGCTTTACCATTATCTCTCAATGTCTACCCTAAACTCAGGTC
CCTCAGTACACTCATTTTCTTTAAAAAATTTTTGTTTTTTTTATTTGTAT
ACACACACTGAATTCAGGAACTCAGGCTTGGCAATAAGCTCCTTTATTCA
CGTAGCCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_f03.b1 MSMg01no516_f03.b1 CHROMAT_FILE:
MSMg01no516_f03.b1 PHD_FILE: MSMg01no516_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:59 2005
         (679 letters)



>mm_chr11_29253774_29254852
          Length = 1079

 Score = 1220 bits (631), Expect = 0.0
 Identities = 664/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtactgtttttgagtgtctgagacattttcataataaaaaggataaaagta 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctttgtactgtttttgagtgtctgagacatttccataataaaaaggataaaagta 264

                                                                       
Query: 65  aaatgtatccgattcacaaagcctttgaatgtatgtcacagaggtctttaatacaggtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgtatccgattcacaaagcctttgaatgtatgtcacagaggtctttaatacaggtat 324

                                                                       
Query: 125 tagcaataggcctatttgatataaaaatttacttcttcttgttttaaagaaatgtagttg 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 tagcaataggcctatttgatataaaactttacttcttcttgttttaaagaaatgtagttg 384

                                                                       
Query: 185 tctctgggcttgtgcttactttcctgtgacatggttcctacaccaagaggggcaggctcc 244
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tctctgggcttgggcttactttcctgtgacatagttcctacaccaagaggggcaggctcc 444

                                                                       
Query: 245 ttcggaaatatgaaacagcttatagtgcctccctctgaaaaatggtgaaaagaattgaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 ttcggaaatatgaaacagcttatagtgcctccctctgaaaaatggtgaaaagaattgaaa 504

                                                                       
Query: 305 tgagccagcaggtcacatacacttgctccttctgtggcaataccaagatcaagagatgag 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 tgagccagcaggtcacatacacttgctccttctgtggcaagaccaagatcaagagatgag 564

                                                                       
Query: 365 ctgttagcatctggcactgtggttcctacatgaaaatagtgactggcaagtcctgaacct 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgttagcatctggcactgtgattcctacatgaaaatagtgactggcaagtcctgaacct 624

                                                                       
Query: 425 acactgaggcagccacagtcaagtcttccaccagaagactgaagaacctgaaagaccaga 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 acactgaggcagccacagtcaagtcttccaccagaagactaaagaacctgaaagaccaga 684

                                                                       
Query: 485 agaaacactacagtttgaggcttgtctagccttcaataagtggattaatttacacaataa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaaacactacagtttgaggcttgtctagccttcaataagtggattaatttacacaataa 744

                                                                       
Query: 545 caacacaacaacaaaaaatggggttgtattactgagtcttttttgtctccacttaaaaat 604
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caatacaacaacaaaaaatggggttgtattactgagtcttttttgtctccacttaaaaat 804

                                                                       
Query: 605 agatgtaggctcttttttccatgttggctcattgcacaatagccctgtttgcttcctctc 664
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 805 agatgtaggctcttttttccatgttggctcattgcacaatggctctgtttgcttcctctc 864

                          
Query: 665 cattaagctgggttc 679
           |||||||||||||||
Sbjct: 865 cattaagctgggttc 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_f03.g1 MSMg01no516_f03.g1 CHROMAT_FILE:
MSMg01no516_f03.g1 PHD_FILE: MSMg01no516_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:00 2005
         (621 letters)



>mm_chr11_29425546_29426566
          Length = 1021

 Score = 1147 bits (593), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggttgtctgtggctggtggaggccggctatggctggtcctgtaacctgcagcttcggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgggttgtctgtggctggtggaggccggctatggctggtcctgtaacctgcagcttcggc 762

                                                                       
Query: 61  tgctggcctgcagtggggaccgggtgctctgcagttccctcccttctccaggaaggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 761 tgctggcctgcagtggggaccgggtgctctgcagttccctcccttctccaggaagaacac 702

                                                                       
Query: 121 gtacttcaaacttgcgtgtatctagctggaaggaagcggcgcaaggtggccctagaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtacttcaaacttgcgtgtatctagctggaaggaagcggcgcaaggtggccctagaaagc 642

                                                                       
Query: 181 tctaacggggtgggcagggtaggtagtggagctagggttctccgactgctggcccagccc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 641 tctaacggggtgggcagggtaggtagtggagctagggttctccggctgctggcccagccc 582

                                                                       
Query: 241 gttcacagtgtgaacttagaggtgtgttgtcaactctgtgcctcgactttatctgttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gttcacagtgtgaacttagaggtgtgttgtcaactctgtgcctcgactttatctgttgta 522

                                                                       
Query: 301 tggaatcacggtacggacttcataagatcgtgggaaggtttcagtgacttgttgagagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tggaatcacggtacggacttcataagatcgtgggaaggtttcagtgacttgttgagagta 462

                                                                       
Query: 361 cgagtcaagtaaacgtttttcgttatgattttcgttgtttttcttcactttggagttttt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 461 cgagtcaagtaaacgtttttcgttatgattttggttgtttttcttcactttggagttttt 402

                                                                       
Query: 421 cctgtctcctctttggccacagccatcatcatctcttgagggtaactcgtttacacctag 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccggtctcctctttggccacagccatcatcatctcttgagggtaactcgtttacacctag 342

                                                                       
Query: 481 cactaccacagattaagggaatagcatagaaaagtttcttatcccaaagcacgctttacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cactaccacagattaagggaatagcatagaaaagtttcttatcccaaagcacgctttacc 282

                                                                       
Query: 541 attatctctcaatgtctaccctaaactcaggtccctcagtacactcattttctttaaaaa 600
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 281 attatctctcattgtctaccctaaactcaggtccctcagtccactcattttctttaaaaa 222

                                
Query: 601 atttttgttttttttatttgt 621
           |||||||| ||||||||||||
Sbjct: 221 atttttgtcttttttatttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |