Query= MSMg01no516_g08.b1 MSMg01no516_g08.b1 CHROMAT_FILE:
MSMg01no516_g08.b1 PHD_FILE: MSMg01no516_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
(706 letters)
>mm_chr11_94770345_94771450
Length = 1106
Score = 1350 bits (698), Expect = 0.0
Identities = 701/702 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaggatcctcctgcctctgctttccaagtgctggaacgaaaggtgtgtgca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ggaattcaaaaggatcctcctgcctctgctttccaagtgctggaacgaaaggtgtgtgca 910
Query: 64 accgtgctggaggcagtatcttttgacttccaggttccatggccttacctatgcgaagca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 accgtgctggaggcagtatcttttgacttccaggttccatggccttacctatgcgaagca 850
Query: 124 agcactctatactttcccatactcaaacagctttctggcccacacacgcccaggatggct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agcactctatactttcccatactcaaacagctttctggcccacacacgcccaggatggct 790
Query: 184 aagtgataatttgggcgaggccaatgttcagtgtattccttgctctgagtgtgtaattga 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aagtgataatttgggtgaggccaatgttcagtgtattccttgctctgagtgtgtaattga 730
Query: 244 tccattgtctgagctgtgtagtgttttatggccgcccttgctctttcttctggagtaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tccattgtctgagctgtgtagtgttttatggccgcccttgctctttcttctggagtaata 670
Query: 304 ggtacctggccttgcggttgctcacttagcttcctgcaagcagcactctgtcagcccctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggtacctggccttgcggttgctcacttagcttcctgcaagcagcactctgtcagcccctg 610
Query: 364 tggttcaaagactgtctctagatgatcagacacaccagggactcttgtcaggttctcctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggttcaaagactgtctctagatgatcagacacaccagggactcttgtcaggttctcctc 550
Query: 424 cagaaacagtctcttctgaagacttggaacctactggctctgagttggggctgcccctac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagaaacagtctcttctgaagacttggaacctactggctctgagttggggctgcccctac 490
Query: 484 tctcagctggcaacatcccctcttctctttacctagccttctcccactcctggagtccat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctcagctggcaacatcccctcttctctttacctagccttctcccactcctggagtccat 430
Query: 544 gtcagctcctctaggcatgggttccctgttacctgaagcctatgtcttcttcattctctt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtcagctcctctaggcatgggttccctgttacctgaagcctatgtcttcttcattctctt 370
Query: 604 tcttgacctaagaaactgaaattgatataatttctggaaaaaaattaaatatttaaatgt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttgacctaagaaactgaaattgatataatttctggaaaaaaattaaatatttaaatgt 310
Query: 664 acctgacattcccttccatttgattggtcattttactgagca 705
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acctgacattcccttccatttgattggtcattttactgagca 268
Score = 221 bits (114), Expect = 2e-61
Identities = 120/122 (98%)
Strand = Plus / Minus
Query: 354 tcagcccctgtggttcaaagactgtctctagatgatcagacacaccagggactcttgtca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcagcccctgtggttcaaagactgtctctagatgatcagacacaccagggactcttgtca 179
Query: 414 ggttctcctccagaaacagtctcttctgaagacttggaacctactggctctgagttgggg 473
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 178 ggttctcctcctgaaacagtctcttctgaagacttggaaccgactggctctgagttgggg 119
Query: 474 ct 475
||
Sbjct: 118 ct 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_g08.g1 MSMg01no516_g08.g1 CHROMAT_FILE:
MSMg01no516_g08.g1 PHD_FILE: MSMg01no516_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
(615 letters)
>mm_chr11_94609747_94610761
Length = 1015
Score = 1135 bits (587), Expect = 0.0
Identities = 607/615 (98%), Gaps = 5/615 (0%)
Strand = Plus / Plus
Query: 1 caggacagtcagggctacacagagaaaccctgtcttgaaaaaccaaagaaaagaaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caggacagtcagggctacacagagaaaccctgtcttgaaaaaccaaagaaaagaaaagaa 265
Query: 61 aagaaaagaaaagaagagaagagaagagaagagaagagaagagaagagaagagaaaagaa 120
||||||||||||||| |||| || |||| |||||||||||||||||||||||||||||
Sbjct: 266 aagaaaagaaaagaa---aaga-aa-agaaaagaagagaagagaagagaagagaaaagaa 320
Query: 121 atagtaattgttacaatggtaacaaagcatttcgtaaaactattaatatttaaagtcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtaattgttacaatggtaacaaagcatttcgtaaaactattaatatttaaagtcact 380
Query: 181 atagttataggaagtcacaagacagaataacaaaccagcaggtgacaggacacacccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagttataggaagtcacaagacagaataacaaaccagcaggtgacaggacacacccttc 440
Query: 241 acattcctgtaattctactattcagtctgatagggcaagatagagaattcaaattaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattcctgtaattctactattcagtctgatagggcaagatagagaattcaaattaagca 500
Query: 301 cctggaccttgagtaatcagggcctggcagagatcgattaggggacagtgcttcccacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggaccttgagtaatcagggcctggcagagatcgattaggggacagtgcttcccacac 560
Query: 361 aactgtggggactgagttgggattcccagaacccatgtaccaagctgattgtggtcacat 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 aactgtggggactgagttgggattcccagaacccatgtaccaagctgatcgtggtcacat 620
Query: 421 aaatttcttattaagcaagtgtgagtggatggatcccagagactccctgtccaaccagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatttcttattaagcaagtgtgagtggatggatcccagagactccctgtccaaccagct 680
Query: 481 tatccgaaatggtgaactctgggctcaataagatgcccagtttaaaaaaaaagtaagtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tatccgaaatggtgaactctgggctcaataagatgcccagtttaaaaaataagtaagtaa 740
Query: 541 acaaataaatgtaggtagatagaagatactagggcatctccacagccctctgacctccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaataaatgtaggtagatagaagatactagggcatctccacagccctctgacctccac 800
Query: 601 atggaagcttgagtg 615
|||||||||||||||
Sbjct: 801 atggaagcttgagtg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
