NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAGTTAGTCACCAACAACCCAAATAACACAAATAAAAA
CTGAGGTACAAATCTAAACACAGAATTCTCAATAGAGCAATCTTGAATTG
CTGAGAAGCACTTAAAGGTTCAAAGTCCTTACTCATCAGGAAAATGCAAA
TCAAAACAACTCTGAGGTTCCATCTTACACCCATCAGAATAGTTAAGAGC
AAAAACTCAGGAGATAGAACATGCTGCCAAGGATTTGGAGCAAGGGGACC
AATACTCCAATACTCCACTGCTGGTGGGAGTACAAGCTTTTACAACCATT
TTGTAAGTCAATTTGACATTTTTTTTCAGGAAACTGAGAAGAACTCTACC
TCAAAACCCAGCTATACCACTCTTGCGCATATATCCAAAGGTGCTTCAAC
ATCTCACAACGACACTTGCTCAACTATTTTCATAACAGCTTTATTCATAA
TAGTCAGAAATTTGAAACGACCTAGATGTCCCTCAACTGAAGAATGGATA
AAGAAAATGTGGTACATCTACACAACCGAATACTATTTGGTTATTGAAAA
CCAAAATATTATGAATTTTGAAGGCAAATGGGTCAAAGTTGAGACTATTA
TCCTGAGTGATATAACCCTATCCCAAAAGGACATGCCTGGTATGTACTCA
CTTATAAGTGGATATTAGCCATAAAATACAGGTACCATGTTTACTCCATA
GTCTCAN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTTTCAAGAATCTCATG
ATTTTTCTGGTTGTTGTAGTAGTTCATAAAAATGGCCTTTTCATTAAATT
TTCGTTTCTATGCCCACTCTGAGAGATCTGGGCAGTTTGAGAAGTACCAA
CTCCCTCTTCTTGTTCTGAGCCAGGTTCCACCACTATAAGGAAATGCCTC
CATAAATTCACTGGCTCAAAATAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAAAAGATGGTGGCTAGACAATAGATAGATGGTGGATAAAAAGT
CATCTATAAAAGATAGATAGATGATAGGTAGGTTGATAGATTGATGGAGA
GATAACATATTAATGAGTGTCAGCAAATTGATGGGTGTGAAAATAGCACC
TTTCCTCTTGCTATTTCTTTATCACTTCAGCAAGACAGTGTTTATGGCAG
ACAGTGTTTTCCCTACTACCATTCACTACATTTCTCATACTTCGGTGCTC
CACAGTTTGAGAAGCTGTATCTTCATCTCCATCCTGTCCATCAAGATGCT
GTTGTCCTTCAAGATTTACATGAGCCACATTGCAAATCAAAATAAACAAG
AGTTATTCCTCTTCTTATAGAATTGTAAACAGGAAAAAATGAAATAATAT
CAAAATT

Query= MSMg01no516_k08.g1 MSMg01no516_k08.g1 CHROMAT_FILE:
MSMg01no516_k08.g1 PHD_FILE: MSMg01no516_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:28 2005
         (674 letters)



>mm_chr11_14533314_14534387
          Length = 1074

 Score =  781 bits (404), Expect = 0.0
 Identities = 422/428 (98%), Gaps = 2/428 (0%)
 Strand = Plus / Minus

                                                                        
Query: 248  aaaataaaataaaataaaataaaataaaataaaagatggtggctagacaatagatagatg 307
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1003 aaaataaaataaaataaaataaaataaaataaaagatggtggctagacgatagatagatg 944

                                                                        
Query: 308  gtggataaaaagtcatctataaaagatagatagatgataggtaggttgatagattgatgg 367
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  gtgggtaaaaagtcatctataaaagatagatagatgataggtaggttgatagattgatgg 884

                                                                        
Query: 368  agagataacatattaatgagtgtcagcaaattgatgggtgtgaaaatagcacctttcctc 427
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  agagataatatattaatgagtgtcagcaaattgatgggtgtgaaaatagcacctttcctc 824

                                                                        
Query: 428  ttgctatttct-ttatcacttcagcaagacagtgtttatggcagacagtgttttccctac 486
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  ttgcta-ttctgttatcacttcagcaagacagtgtttatggcagacagtgttttccctac 765

                                                                        
Query: 487  taccattcactacatttctcatacttcggtgctccacagtttgagaagctgtatcttcat 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  taccattcactacatttctcatacttcggtgctccacagtttgagaagctgtatcttcat 705

                                                                        
Query: 547  ctccatcctgtccatcaagatgctgttgtccttcaagatttacatgagccacattgcaaa 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  ctccatcctgtccatcaagatgctgttgtccttcaagatttacatgagccacattgcaaa 645

                                                                        
Query: 607  tcaaaataaacaagagttattcctcttcttatagaattgtaaacaggaaaaaatgaaata 666
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 644  tcaaaataaacaagagttattcctcctcttatagaattgtaaacaggaaaaaatgaaata 585

                    
Query: 667  atatcaaa 674
            ||||||||
Sbjct: 584  atatcaaa 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)