Query= MSMg01no516_k13.b1 MSMg01no516_k13.b1 CHROMAT_FILE:
MSMg01no516_k13.b1 PHD_FILE: MSMg01no516_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:29 2005
(641 letters)
>mm_chr11_115712743_115713783
Length = 1041
Score = 1176 bits (608), Expect = 0.0
Identities = 631/640 (98%), Gaps = 4/640 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaacaggtttc--gagcggatgcagaggctgtggagggtgctgcttactggct 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaacaggt--caggagcggatgcagaggctgtggagggtgctgcttactggct 261
Query: 62 tgctcctcatggcttgctcagcctgctttcttgtagaacccaggaccaccagcctagggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgctcctcatggcttgctcagcctgctttcttgtagaacccaggaccaccagcctagggg 321
Query: 122 atggcaccacccacagtgggctggactctcccatatcaaccactagttaagaaaattctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atggcaccacccacagtgggctggactctcccatatcaaccactagttaagaaaattctc 381
Query: 182 tatgggcttgcctacagatcagtcttatgggggcattttctcaactggggttctctcctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatgggcttgcctacagatcagtcttatgggggcattttctcaactggggttctctcctc 441
Query: 242 tcagatgacgttcacctgtgtcaaggtgacataaaattagccagcacagtcatcctatta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcagatgacgttcacctgtgtcaaggtgacataaaattagccagcacagtcatcctatta 501
Query: 302 tttttctgttcctttccctccgtgaaatgctcgaaggtcaggcaagttctcctcggggaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttttctgttcctttccctccgtgaaatgctcgaaggtcaggcaagttctcctcggggaa 561
Query: 362 tctcttacttgcacaaaagtcctcttgggtccaagcagtcagatcagcatggttatggcc 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctcttacttgcgcaaaagtcctcttgggtccaagcagtcagatcagcatggttatggcc 621
Query: 422 agcccttagcattgatcgagtgagtgtcctgagagcccgcccttaaacctagcccaactt 481
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 622 agcccttagcattgatcgagtgagtgtcctgagagcccgcccttagacctagcccaactt 681
Query: 482 cctgcaggcgcaggcccaggctgtgaataccaagactgagcggacgggcctgcagaacat 541
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 682 cctgcaggcgcaggcccaggctgtgaatatcaaggctgagcggacgggcctgcagaacat 741
Query: 542 ggagttggcgcccgtgcaacggaagattgaggcccgctccgcggaggactccttcactgg 601
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 742 ggagttggcgcccgtgcaacggaagattgaggctcgctccgcggaggactccttcactgg 801
Query: 602 ctttgtccggaccctctatttcgctgatacctacctgagg 641
||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctttgtccggaccctctatttcgctgatacctacctgagg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_k13.g1 MSMg01no516_k13.g1 CHROMAT_FILE:
MSMg01no516_k13.g1 PHD_FILE: MSMg01no516_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:29 2005
(641 letters)
>mm_chr11_115889816_115890856
Length = 1041
Score = 973 bits (503), Expect = 0.0
Identities = 580/641 (90%), Gaps = 58/641 (9%)
Strand = Plus / Minus
Query: 1 aaagcctggtggcatccgttggtagttctaggtcagccagagctgtcagtctgtctaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaagcctggtggcatccgttggtagttctaggtcagccagagctgtcagtctgtctaaaa 713
Query: 61 acccgaacaagaacaaccaaacaacaacaggttggagatgagtaggggtaaaggtgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acccgaacaagaacaaccaaacaacaacaggttggagatgagtaggggtaaaggtgcttg 653
Query: 121 cttccctaggctgcaaacccgagtgggatctctgggactgatgtacaggtggtaggagag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cttccctaggctgcaaacccaagtgggatctctgggactgatgtacaggtggtaggagag 593
Query: 181 aacccactccacgaatttgtcctctgacctccacagaggtccacacttgctcccctcata 240
|||||||||||||||| | |||
Sbjct: 592 aacccactccacgaat----------------------------a------------ata 573
Query: 241 cacacatcatgcacacacaaccaataataaaaatgtccatcatagatacgtaatacttcc 300
|| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 572 --------at--------aa--aataataaaaatgtccatcatagatatgtaatacttcc 531
Query: 301 catttgacctcgttttctatgttcaatctatatcaaattcttttttatttttggtttgtg 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 catttgaccttgttttctatgttcaatctatatcaaattcttttttatttttggtttgtg 471
Query: 361 agtacatgtttgtggttttgaggcaggatcttacttatgtagccccagcaggcttgaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agtacatgtttgtggttttgaggcaggatcttacttatgtagccccagcaggcttgaaac 411
Query: 421 ttgatatgtagatcaggctagacttgaatttacatagacttgcctgcctctggctcccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttgatatgtagatcaggctagacttgaatttacatagacttgcctgcctctggctcccaa 351
Query: 481 aagctgggattccaggcttgcaccaccacacttagtcaaatccattgttttcaaaaccta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagctgggattccaggcttgcaccaccacacttagtcaaatccattgttttcaaaaccta 291
Query: 541 cttgttttgttaaatgggatcaagttagccttgttaaagctaacccgagtgggatctctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttgttttgttaaatgggatcaagttagccttgttaaagctaacccgagtgggatctctg 231
Query: 601 ggctggggcgtaacctttggtagaagcaagcaagaaggcag 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ggctggggcgtaacctttggtagaagcaagcaagaaggcag 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
