NNNAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGGTTCCGTTCAAAATACTTCATGCTCAGCAAGAA
TGTATTCTAAATTAATACATTTTTAATTTTTTATCTTGATTCATTTATTT
ACCATGGCTTCAAACCCAGTGAATACATTTAGCATGCAAGTAGAGTTACT
TTGCAATGGGGGTACCCCTGCAAAAAGCTGCTGCATAGTTTTCTTGATTG
CAAAGGCCTCATGTAGCTAGGTGTTGAAAAGTGGAGACTTCTAGAGGTAA
ACTCTGGACAGGATGCAGGAAATAGCTAATATAAGAGGTGATTGTCTTTG
GCCAGGATCTATAATGTATACGTCAGATAACTGAGGCTTCTGACCCCAAC
TAACCCTGCCATGCCACACTCTTATGATAATCCAGTAGTACCCTAGAAAG
CACTTCACCTGCCATTCTGCATGCTCTGGTTACTCTTAGCTGTAGTGCAT
ATGTATTGCTAGCACTTGGTGGCCAGTGATGGGCATACACTTGCTGTATT
TGCATATCCTAAATCTAGGATTTCCCAACTCTTTTTAAAGCGATGAAGAA
AGGAGATATATTTTCTCTCTTTAGTATTAAGATCTGTTTTTTTTTTGTTT
TGATATTAAAGACATTTATTGTACAAAATGAGTCTTTTTGTTCTTAAGAG
ATGATGNTTTAAAGAGACAGACTCCAGGAAGAAACTTTCTACTTACCGTA
CTCGCTATTGTCTTACAGN

NNNNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATAGTAAAAGCA
ATACACAGCAATCCAGCAGTCAACATCAAACTAAATGGATAGAAACTTGA
AACAATCCCACTAAAATCAGGCACTAGACAAGGTTGCCCATTCTCTCCCT
ACCTATTCAATATAGTACTGAAAGTTCTAGCTAGAGCAATTAGACAACAA
ATGGAGGTCAGGAGGGATACAAATTGGAAAGGAAGAAATCAAAATATCAC
TATTGGCAAATGATATGATAGTACACTTAAGTGACCCCAAATATTCCATC
AGAGAACTCTTAAAGCTGATAAAAAAAAAAAAAACTTCAGCCAACTGGCT
GGATATAAAATTAACTCTAACAAATCAGTAGGCTTCCCCTACTGAAAGGA
TAAACAGTCTGAGAAAGAAATCCGAGAAATGACACCCTTCACAATAGTCA
CAAATAATATTACATGCCTTGGTGTGACACTAACCAAGCAAGTAAAGATC
TGTATGACAAGAACTTCAAGTCTCTGAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATAGATAGGCAGGATTAATATAGTAAAA
ATGGCCATCTTGCTGAAAGCAATCTACAGATTCAATGCAATCCCCACCAA
AATTCCAAATAAATTCTTCATAGAGTTAAAAAGAACAATTTGCAAATTCA
TTTGGAATAAAAAAAAAA

Query= MSMg01no516_m19.b1 MSMg01no516_m19.b1 CHROMAT_FILE:
MSMg01no516_m19.b1 PHD_FILE: MSMg01no516_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:40 2005
         (576 letters)



>mm_chr11_26882240_26883215
          Length = 976

 Score = 1060 bits (548), Expect = 0.0
 Identities = 567/574 (98%), Gaps = 4/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttgg-t-tccgttcaaaatacttcatgctcagcaagaatgtattctaaatt 62
           ||||||||||||| | |  ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcactttggctat--gttcaaaatacttcatgctcagcaagaatgtatcctaaatt 262

                                                                       
Query: 63  aatacatttttaattttttatcttgattcatttatttaccatggcttcaaacccagtgaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 aatacatttttaattttttatcttgattcatttatttaccatggcttcaaatccagtgaa 322

                                                                       
Query: 123 tacatttagcatgcaagtagagttactttgcaatgggggtacccctgcaaaaagctgctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacatttagcatgcaagtagagttactttgcaatgggggtacccctgcaaaaagctgctg 382

                                                                       
Query: 183 catagttttcttgattgcaaaggcctcatgtagctaggtgttgaaaagtggagacttcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catagttttcttgattgcaaaggcctcatgtagctaggtgttgaaaagtggagacttcta 442

                                                                       
Query: 243 gaggtaaactctggacaggatgcaggaaatagctaatataagaggtgattgtctttggcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaggtaaactctggacaggatgcaggaaatagctaatataagaggtgattgtctttggcc 502

                                                                       
Query: 303 aggatctataatgtatacgtcagataactgaggcttctgaccccaactaaccctgccatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggatctataatgtatacgtcagataactgaggcttctgaccccaactaaccctgccatg 562

                                                                       
Query: 363 ccacactcttatgataatccagtagtaccctagaaagcacttcacctgccattctgcatg 422
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ccacactcttatgataatccagtagtagcctagaaagcacttcacctgccattctgcatg 622

                                                                       
Query: 423 ctctggttactcttagctgtagtgcatatgtattgctagcacttggtggccagtgatggg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctctggttactcttagctgtagtgcatatgtattgctagcacttggtggccagtgatggg 682

                                                                       
Query: 483 catacacttgctgtatttgcatatcctaaatctaggatttcccaactctttttaaagcga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catacacttgctgtatttgcatatcctaaatctaggatttcccaactctttttaaagcga 742

                                             
Query: 543 tgaagaaaggagatatattttctctctttagtat 576
           ||||||||||||||||||||||||||||||||||
Sbjct: 743 tgaagaaaggagatatattttctctctttagtat 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)