Query= MSMg01no517_d22.b1 MSMg01no517_d22.b1 CHROMAT_FILE:
MSMg01no517_d22.b1 PHD_FILE: MSMg01no517_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:15 2005
(660 letters)
>mm_chr11_112840806_112841865
Length = 1060
Score = 1263 bits (653), Expect = 0.0
Identities = 656/657 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactcgtttaaggccccagcaactcaagatggtaggagctataaggaaattggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcgtttaaggccccagcaactcaagatggtaggagctataaggaaattggc 263
Query: 64 ccagaaagccagacactcagctaaagattataccaatagagtgacccggttggatctggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagaaagccagacactcagctaaagattataccaatagagtgacccggttggatctggc 323
Query: 124 ccacactgaccttatgcagtggcagacaagtcctgtgaccacagcttccggtagagcagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccacactgaccttatgcagtggcagacaagtcctgtgaccacagcttccggtagagcagg 383
Query: 184 tgccagtcgcagaggacttaaaaaattggctggtgtgactgaaaaaccaagtgtctagtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgccagtcgcagaggacttaaaaaattggctggtgtgactgaaaaaccaagtgtctagtt 443
Query: 244 ttatttaactgtaattcattcaactttgaaggcaggaaagatggacagagcagtacaccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttatttaactgtaattcattcaactttgaaggcaggaaagatggacagagcagtacaccc 503
Query: 304 aaacgggctggggttgaggggtggaaaccagacttcttggtgagtctctcctagagtgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaacgggctggggttgaggggtggaaaccagacttcttggtgagtctctcctagagtgag 563
Query: 364 tgacagctaaggattagtgagaaatgactctgtagggatggggagatggctcagtggtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacagctaaggattagtgagaaatgactctgtagggatggggagatggctcagtggtta 623
Query: 424 aagcgcttgccgcccaaatacaaaaatcagaattttgatcccaagaacccacagaaatgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcgcttgccgcccaaatacaaaaatcagaattttgatcccaagaacccacagaaatgt 683
Query: 484 ctggtggacatggtggcccacctggaattctagccgagacagggggagacaagggactcc 543
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 ctggtggacatggtggcccacctggaattctagcctagacagggggagacaagggactcc 743
Query: 544 ccagacaaagctggttggcaagagtgtccatactgctgtggtatggatgggactgagaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccagacaaagctggttggcaagagtgtccatactgctgtggtatggatgggactgagaga 803
Query: 604 gcctggctcaattaataaagtaaaagagtaagggaggatgactcttaatatcaactt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcctggctcaattaataaagtaaaagagtaagggaggatgactcttaatatcaactt 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d22.g1 MSMg01no517_d22.g1 CHROMAT_FILE:
MSMg01no517_d22.g1 PHD_FILE: MSMg01no517_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:15 2005
(564 letters)
>mm_chr11_112971112_112972074
Length = 963
Score = 998 bits (516), Expect = 0.0
Identities = 553/566 (97%), Gaps = 3/566 (0%)
Strand = Plus / Minus
Query: 1 acactgaataaaaacagggcatggttttgtgagcttataatcccagaatttaggatgcag 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 953 acactgaataaaaacagggcgtggttttgtgagcttataatcccagaatttaggatgcag 894
Query: 61 aggcagacagactgctggagcttgctatcctgccaacatagcttgcttagcgagctccag 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 893 aggcagacagaccgctggagcttgctatcctgccaacatagcttgcttagcgggctccag 834
Query: 121 atcagtgagaggttctgcataaataaaagtttaaaagtggttgctgtccaaggaacgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atcagtgagaggttctgcataaataaaagtttaaaagtggttgctgtccaaggaacgaca 774
Query: 181 tttgatgttgt--acacacacacacatggatgcacacgaacacacataaaataatcatcc 238
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttgatgttgtacacacacacacacatggatgcacacgaacacacataaaataatcatcc 714
Query: 239 cacagcatcaataagtacaagattggaaactctgtaagagaatctttcctttgaatgctc 298
|||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 713 cacagcctcagtaagtacaaggttggaaactctgtaagagaatctttcctttg-atgccc 655
Query: 299 gagccctgcagaaacccttgggtatcgtgaagcagagaagtgattcagtaactatcatat 358
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 654 gagccctgcagaaacccttgggtgtcgtgaagcagagaagtgattcagtaactagcatat 595
Query: 359 ataaagttagtgcttctcatggcttcgtgggcatccacctgacaacggaactgggtccct 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ataaagttagtgcttctcacggcttcgtgggcatccacctgacaacggaactgggtccct 535
Query: 419 gctgctgcctcatggagggctgggtgtgctgcccaagaaggaagaagctgaactaagcgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gctgctgcctcatggagggctgggtgtgctgcccaagaaggaagaagctgaactaagcgg 475
Query: 479 ccaaaataagtatcagtacctcctgatccatccgtctctggcaagggtctggttgttgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccaaaataagtatcagtacctcctgatccatccgtctctggcaagggtctggttgttgca 415
Query: 539 tgtgtgtgtgtttgtgtgtgtgtgtg 564
||||||||||||||||||||||||||
Sbjct: 414 tgtgtgtgtgtttgtgtgtgtgtgtg 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
