Query= MSMg01no517_f04.b1 MSMg01no517_f04.b1 CHROMAT_FILE:
MSMg01no517_f04.b1 PHD_FILE: MSMg01no517_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:21 2005
(630 letters)
>mm_chr11_35045438_35046467
Length = 1030
Score = 1180 bits (610), Expect = 0.0
Identities = 622/626 (99%)
Strand = Plus / Plus
Query: 5 gaattcttcccagactttgtgcaattatgatgacaagggtggttccagacagaaccaaag 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcttcccagactttgtgcaattatgatgacaagggtggctccagacagaaccaaag 264
Query: 65 agggactcagttcttgtccaaagggtccccaagagagtccttttcaggaaaggcagagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggactcagttcttgtccaaagggtccccaagagagtccttttcaggaaaggcagagtg 324
Query: 125 ctcagagcagatcagtgtctggagagggtggaagaagtcacaactgtagatgaaaagaag 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ctcagagcagatcagtgtctggagagggtggaagaagtcgcaactgtagatgaaaagaag 384
Query: 185 cagaagaattgtagattgggaatgggcccgggtacttttattctgtgaaggttttgagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaagaattgtagattgggaatgggcccgggtacttttattctgtgaaggttttgagtg 444
Query: 245 ccctgattcaggacctgaagctagctaactatgaccagatcctgctacagcacccctgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctgattcaggacctgaagctagctaactatgaccagatcctgctacagcacccctgag 504
Query: 305 agatgatgtggcctcggtctggcctggatacttggctttgaatctattatgtaagaggca 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 agatgatgtggcctcggtctggcctggatacttggctttgaatttattatgtaagaggca 564
Query: 365 agaggacaataacaacccagccttaagctctacttggagagactgccagggccgcaggaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaggacaataacaacccagccttaagctctacttggagagactgccagggccgcaggaa 624
Query: 425 acatagcatttggtatgcagagcagaggttgggagcagccatccctagcatcattatcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatagcatttggtatgcagagcagaggttgggagcagccatccctagcatcattatcac 684
Query: 485 gagggccttcatgtgacattcagtattccacatgttctaggccagttcttcctggaacca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagggccttcatgtgacattcagtattccacatgttctaggccagttcttcctggaacca 744
Query: 545 gaggagtagtgtcgtttgcatttggaaaacagagggtcaaagggcttagtaacttgtcct 604
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaggagtagtgtcatttgcatttggaaaacagagggtcaaagggcttagtaacttgtcct 804
Query: 605 tagctctacagtgagagaataatcca 630
||||||||||||||||||||||||||
Sbjct: 805 tagctctacagtgagagaataatcca 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_f04.g1 MSMg01no517_f04.g1 CHROMAT_FILE:
MSMg01no517_f04.g1 PHD_FILE: MSMg01no517_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:21 2005
(641 letters)
>mm_chr11_35209923_35210964
Length = 1042
Score = 1210 bits (626), Expect = 0.0
Identities = 638/642 (99%), Gaps = 1/642 (0%)
Strand = Plus / Minus
Query: 1 cctatgtctactctagtcaatggcctttgacttttggatgtgaccgtcaggaacacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cctatgtctactctagtcaatggcctttgacttttggatgtgaccgtcaggaacacagca 783
Query: 61 caattgccagcaccctcccttccgtcaacacccatgttcttccaattgtgatgcatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 caattgccagcaccctcccttccgtcaacacccatgttcttccaattgtgatgcatggaa 723
Query: 121 gttgggcatgagaattcataccaggatcgggatgagctgagctcagatgccccttgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gttgggcatgagaattcataccaggatcgggatgagctgagctcagatgccccttgatgg 663
Query: 181 gatggagctgaagagagaggcatcctcccgctgagaaccatgactctaattgaaggttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gatggagctgaagagagaggcatcctcccgctgagaaccatgactctaattgaaggttaa 603
Query: 241 tcataccatttcagtgtcagacttgagctgttctgcctagttgtccctgaactgggtggg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 602 tcataccatttcagtgtcagacttgagctgttctgcctagttgtcccagaactgggtggg 543
Query: 301 gattccgaaacacctctaggctttgctttatagaaaattagttgagaacccacaaaacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gattccgaaacacctctaggctttgctttatagaaaattagttgagaacccacaaaacct 483
Query: 361 gtaaaagctctgcctatgaccattgttgaattggcctattctcctctcacgcaaacgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtaaaagctctgcctatgaccattgttgaattggcctattctcctctcacgcaaacgctt 423
Query: 421 ttgcctgcaattcagactcataaaaagagaaaat-aaagagtcacagagactactgcagc 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 422 ttgcctgcaattcagactcataaaaagagaaaatgaaagagtcacagagactactgcagc 363
Query: 480 agatactgaggtgagacgtggcacctgatgtcagaactaggaatcggagctaagcatggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agatactgaggtgagacgtggcacctgatgtcagaactaggaatcggagctaagcatggc 303
Query: 540 aaattctagtgtgcatgggtcacggagctcacaaaagaatggcaggaaactgccaggtgc 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaattctagtgtgcatggggcacggagctcacaaaagaatggcaggaaactgccaggtgc 243
Query: 600 aaacagccatgatcagacagacctgtggttactaccactctg 641
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 242 aaacagccatgaacagacagacctgtggttactaccactctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space: 651192
Effective search space used: 651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
