BAC Information

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BAC

Clone NameMSMg01-517L03
Chromosome11 (Build37)
Map Location 11,929,396 - 11,930,043
singlet/doubletsinglet
Overlap geneGrb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517L03.T7 (MSMg01no517_l03.b1)MSMg01-517L03.TJ (MSMg01no517_l03.g1)
ACCAG589382AG589383
length758757
length of high quality
(start - end)
654 (37 - 690)569 (66 - 634)
definitionCHROMAT_FILE: MSMg01no517_l03.b1 PHD_FILE: MSMg01no517_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:52 2005CHROMAT_FILE: MSMg01no517_l03.g1 PHD_FILE: MSMg01no517_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGG
CTTCATATATGCTGGACAATAGCCCCCCCCCACCAGCCCTCTTAGATTAT
GCAGTAGTGATTAGGGTTCAGGATATATTTTAATTCAGTGGACACAGCTT
TTCTACATGGCCCCTTTCGCCAGCATCTGCTACTGTGCCAAATCCTACAG
CAGAGTGATAGATTTGTTTTAGCTAGTTCACTTGTGTTGGCCCATTATTA
TACCCAGAGCAAGCATTCTTCTTGCACAGCATAACAGTCTAGGGTCACTG
TGCAATATCTCATTATTTCATTTAGAAATAAGAATTTAAAGAACTTTCCC
TGCATAGTTTCTTCTCATTTACATATTTATTTTGTTTAGCTTCTTTGCAT
CCTACTTAATGGGAAGTGAAGTGAGCCTAGAGATGGGTAGGAAGTAGGGG
GCCTAGTGAGCCACTGTGAAACTGAGTAGAGCTGAGGGCAGCAGCAGTGA
GCACTCACTTGGGCTGACTAGGAAACTGGGCAAGCTGGAGTCCAAGGTTG
GGTCTCTAATTGGTACCTCTTGCTGTCAGCCAGCTAGTGCTCCATTGATG
CCTATAGGGACTGAGTAGACAGGACAGTGGTTCTCGTGTATACTGTGGGT
CACGAGGGTGTAGTTAAAGGAGTTTTAGATCAATGATGTGTAGACAGGTC
CCATGGAGGCTGTTGCCCATANGTTACCTATGGAAAGCTGGAGTGGCTTC
TGCCCCTG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTAAGGACGAACTAGGACT
GTTGGAACACTGGCGGACAGCTTTAGCTATGTCAGAATTCAATCTTAAAA
GGCACTTATGATAGGAAGATATTGAAAGAGAGCACGTGGATCCATACACT
AGACTAACGCGGGAATGGAACGCGGGAATGAAAAATTACTGTATGGGTAG
GGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCAT
GAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCG
TAGCACCAAACTCCCTATCCCATCCCCGCTCCCCCTGCTCACCAACCCAC
CTACTCCCACTTCCTGGTCCTGGCATTCCTCTACACTGGGGGCATTGAGC
CTTCACAGGAACAAGGCCCTCTCCTCCCATTGATGACCTACAAGGCCATC
CTCTGCTACATGTATGGCTGGAGCCAGGGGTCCCTCCATGTGTACTTTTT
GGTTGGCGGTTTAGTCCCAGGAAGCTTTGGGGGTACTGGTTGGTTCATAT
TGTTGTTCCTCCTATGGGGATGCAAACCCCATTAGCTCCTTGGGTGCTTT
CTCTAGCTCCTCCATTGAGGACCCTGTTCTCANGCAATGGTTGGCTGAGA
GCATCCACCTCTGTATTTGTCAGGCACTGGCAGAGCCTCTCTAGAGAAGG
CTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_l03.b1 MSMg01no517_l03.b1 CHROMAT_FILE:
MSMg01no517_l03.b1 PHD_FILE: MSMg01no517_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:52 2005
         (654 letters)



>mm_chr11_11929192_11930243
          Length = 1052

 Score = 1207 bits (624), Expect = 0.0
 Identities = 643/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggcttcatatatgctggacaatagcccccccccaccagccctcttagattat 64
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 852 gaattcagggcttcatatatgctggacaata--ccccccccaccagccctcttagattat 795

                                                                       
Query: 65  gcagtagtgattagggttcaggatatattttaattcagtggacacagcttttctacatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcagtagtgattagggttcaggatatattttaattcagtggacacagcttttctacatgg 735

                                                                       
Query: 125 cccctttcgccagcatctgctactgtgccaaatcctacagcagagtgatagatttgtttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cccctttcgccagcatctgctactgtgccaaatcctacagcagagtgatagatttgtttt 675

                                                                       
Query: 185 agctagttcacttgtgttggcccattattatacccagagcaagcattcttcttgcacagc 244
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agctatttctcttgtgttggcccattattatacccagagcaagcattcttcttgcacagc 615

                                                                       
Query: 245 ataacagtctagggtcactgtgcaatatctcattatttcatttagaaataagaatttaaa 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 ataacagtctagggtcactgtgcaatatctcattatctcatttagaaataagaatttaaa 555

                                                                       
Query: 305 gaactttccctgcatagtttcttctcatttacatatttattttgtttagcttctttgcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaactttccctgcatagtttcttctcatttacatatttattttgtttagcttctttgcat 495

                                                                       
Query: 365 cctacttaatgggaagtgaagtgagcctagagatgggtaggaagtagggggcctagtgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctacttaatgggaagtgaagtgagcctagagatgggtaggaagtagggggcctagtgag 435

                                                                       
Query: 425 ccactgtgaaactgagtagagctgagggcagcagcagtgagcactcacttgggctgacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccactgtgaaactgagtagagctgagggcagcagcagtgagcactcacttgggctgacta 375

                                                                       
Query: 485 ggaaactgggcaagctggagtccaaggttgggtctctaattggtacctcttgctgtcagc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 ggaaactgggcaagctggagtccaaggttgggtctctaattggtacctcttgttgtcagc 315

                                                                       
Query: 545 cagctagtgctccattgatgcctatagggactgagtagacaggacagtggttctcgtgta 604
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagctagtactccattgatgcctatagggactgagtagacaggacagtggttctcgtgta 255

                                                             
Query: 605 tactgtgggtcacgagggtgtagttaaaggagttttagatcaatgatgtg 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tactgtgggtcacgagggtgtagttaaaggagttttagatcaatgatgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1052
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1042
Effective search space:   671048
Effective search space used:   671048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)