BAC Information

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BAC

Clone NameMSMg01-517N03
Chromosome11 (Build37)
Map Location 89,695,224 - 89,695,744
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517N03.T7 (MSMg01no517_n03.b1)MSMg01-517N03.TJ (MSMg01no517_n03.g1)
ACCAG589476AG589477
length735789
length of high quality
(start - end)
526 (41 - 566)---
definitionCHROMAT_FILE: MSMg01no517_n03.b1 PHD_FILE: MSMg01no517_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:02 2005CHROMAT_FILE: MSMg01no517_n03.g1 PHD_FILE: MSMg01no517_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAAAGGGATGTTTTAATAATTAACGCATAAATAATTGCAAAATGGCATG
CAAGTGACATGTGGCTGGGCCAACTGAAATATGAGGTATGTGGAAGCGTT
AACAGCTCCCAGGGAAAGCAGCTGTTAATTCTGCCTGGCATGGGGAACAG
CCTCTCACACAAGCTAAACTCATGTAACTTAAACCAGCTTTAAGTATTCG
TCCAAATATGCATTCTGCTGCCATGTGCTCAATGCCCAGGAAGTGCCAGG
CAGGGCATATTTTGAGAGTTCTTGGAGCTCAATGACTCCTGGCCTTTCTG
GACAGCCAGATCAAGGATCATTGGACAACCCAAAAAAAAAAAAAAAAAGA
ACATTTATTTAGGACTGTTTTTAGGGTCTGTTAATTATAACATATGGCAT
TTTTAGGTGCTGAACATCATTCAGTAACTAGTTTTTGACTCAAAATCCTC
TTACAATTGGCAATTGTCATGGGTTGTCCTGTTCTTTGTCACCATAACAC
ATTGCCCGAACAAGCTATTGATGAAAAAAGAAGACGTTTACTTGGTTGAC
TGTTTGGGACACTCACAAGCATGTTGCCAAAATCAGCTCAGCCAACGTAA
CATCTAATCTTGGCGTTGAAAGCCAAAGGAGTTTAGGTAAAAACAGGCGA
TGATCAGATTTCTAAATAAGGAACTGGGGGAATGG
TTTTTTTTTTCCCTCNCTTTTCTTTTTTTTCTCTTCCNCCCCNCNNNNNC
CCTTGTTGTGATTCTTNNTGCCNCCNCCCTTNCCNCCCNCNCNCNCTTCA
CTATTATTTTTCCTTTTTCTTTTTTTTTTTTTTTTTTTCCNTTTTTCCCC
TTTTTTTTNTNNNTTNNNNTTTTTTTTTTTTTTTATTGGGGGTTAGGTTT
CTTGGGGCCGGGCCCGCNCCTTTTTTTTTTTTTTTCNACTTTTTTTTAGG
GTTTAATATTTTTTTTAAAATGTTTTTTTTTTCGGGAATTTTTTTTTTTT
TTACTTTTTTAAGGTTTTAAAAAAAAACCTTCCTTTTTTTTTTTTTTTTG
GAAATTTTTTTTTTTTTTTTAAAAACAAAAAATTTTTTTTTTTTTTTTTT
TTGGGAATTTTTTAATTTTTAAAATTTTTTTTTCCCCTCTTTTTTTTTTT
TTTTTTTTTTTTTTATAAAAATTTTTTTTTTTTTTTTTTTTTTTTCTCCC
CCCANCAAAACTTTTTTTTTTTTTATTTTCCCCCCCCCCCTTGGNGGGGG
GGNGGTTTTTTTATAAATTCTCCTTTTTTTTTTTTTTTTTTTTTAAAAAC
ACTTTTTTTTTTAAAAAAAAATTTTTTTTAAAAAAATTTTTTTTTTTTTT
TTTTTTTTTAAAAAAAAAATTTTTTTCTTTTTTTTTTTCTTTTGGGGAGG
CGCTTTTTTTCTTTTTTTTTTTTTTTTTATTAAATTTTTTTTTTTTTTTC
CACAAAATAAAATTTTTTTTTTTTTTTTTTTTTCTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_n03.b1 MSMg01no517_n03.b1 CHROMAT_FILE:
MSMg01no517_n03.b1 PHD_FILE: MSMg01no517_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:02 2005
         (526 letters)



>mm_chr11_89695020_89695944
          Length = 925

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaagggatgttttaataattaacgcataaataattgcaaaatggcatgcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcttaaagggatgttttaataattaacgcataaataattgcaaaatggcatgcaag 666

                                                                       
Query: 65  tgacatgtggctgggccaactgaaatatgaggtatgtggaagcgttaacagctcccaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgacatgtggctgggccaactgaaatatgaggtatgtggaagcgttaacagctcccaggg 606

                                                                       
Query: 125 aaagcagctgttaattctgcctggcatggggaacagcctctcacacaagctaaactcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaagcagctgttaattctgcctggcatggggaacagcctctcacacaagctaaactcatg 546

                                                                       
Query: 185 taacttaaaccagctttaagtattcgtccaaatatgcattctgctgccatgtgctcaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taacttaaaccagctttaagtattcgtccaaatatgcattctgctgccatgtgctcaatg 486

                                                                       
Query: 245 cccaggaagtgccaggcagggcatattttgagagttcttggagctcaatgactcctggcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cccaggaagtgccaggcagggcatattttgagagttcttggagctcaatgactcctggcc 426

                                                                       
Query: 305 tttctggacagccagatcaaggatcattggacaacccaaaaaaaaaaaaaaaaagaacat 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 tttctggacagccagatcaaggatcattggacaaccc-aaaaaaaaaaaaaaaagaacat 367

                                                                       
Query: 365 ttatttaggactgtttttagggtctgttaattataacatatggcatttttaggtgctgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttatttaggactgtttttagggtctgttaattataacatatggcatttttaggtgctgaa 307

                                                                       
Query: 425 catcattcagtaactagtttttgactcaaaatcctcttacaattggcaattgtcatgggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catcattcagtaactagtttttgactcaaaatcctcttacaattggcaattgtcatgggt 247

                                                     
Query: 485 tgtcctgttctttgtcaccataacacattgcccgaacaagct 526
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 tgtcctgttctttgtcaccataacacattgcctgaacaagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space:   472140
Effective search space used:   472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)