Query= MSMg01no520_g20.b1 MSMg01no520_g20.b1 CHROMAT_FILE:
MSMg01no520_g20.b1 PHD_FILE: MSMg01no520_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:28 2005
(704 letters)
>mm_chr11_84092117_84093220
Length = 1104
Score = 1265 bits (654), Expect = 0.0
Identities = 684/700 (97%), Gaps = 10/700 (1%)
Strand = Plus / Plus
Query: 5 gaattcttagatctttcccagaacgtcaatatccttttgccttccagaaactcatcctct 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagatcttactgagaacgtcaatatccttttgccttccagaaactcatcctct 264
Query: 65 cggaaacatctattttcgatgtcctcccaaactttttttaccacagcaaccaggtggtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggaaacatctattttcgatgtcctcccaaactttttttaccacagcaaccaggtggtga 324
Query: 125 ggatggcagctctggaggtgagtgttggtgtgtcacacggcctttccatggtttttatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatggcagctctggaggtgagtgttggtgtgtcacacggcctttccatggtttttatgt 384
Query: 185 ctgttctgctgtcagttcttttctcttcctcttttcttctgaaatgctgaatgctcagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttctgctgtcagttcttttctcttcctcttttcttctgaaatgctgaatgctcagag 444
Query: 245 tcaggtgctttagctgatgttttatctgcattcattgccagcttctgggtcaaataatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaggtgctttagctgatgttttatctgcattcattgccagcttctgggtcaaataatag 504
Query: 305 ggaaacggctgccaggttttccaatagtctattctgtccaggtacttgaatttttccatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaaacggctgccaggttttccaatagtctattctgtccaggtacttgaatttttccatt 564
Query: 365 ttagaaagagttaagactcacagtagcataagtgaaagctgtatggttgatccgcacata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttagaaagagttaagactcacagtagcataagtgaaagctgtatggttgatccgcacata 624
Query: 425 ttaccgtaccgttctgttactagagccaaatattagttctgtcgtgaactgtggtttggg 484
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 625 ttaccgtaccgttttgttactagagccaaatattagttctgccgtgaactgcggtttggg 684
Query: 485 tgctttatgttttcatctaaccctacagctgctttataaagttaaaaacaagtaagcaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctttatgttttcatctaaccctacagctgctttataaagttaaaaacaagtaagcaaa 744
Query: 545 caaacaaacaaataaacaaacgaggctgtgaggtcaggggacttgccaaagaaaaccaca 604
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaaca----------caaacgaggctgtgaggtcaggggacttgccaaagaaaaccaca 794
Query: 605 tattaaccagaggagtttgcatttggtcagcttgactccaaagacttttgcatcacagca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tattaaccagaggagtttgcatttggtcagcttgactccaaagacttttgcatcacagca 854
Query: 665 caccacctcattaaacacaaaaattgcagaccctgaatga 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 caccacctcattaaacacaaaaattgcagaccctgaatga 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_g20.g1 MSMg01no520_g20.g1 CHROMAT_FILE:
MSMg01no520_g20.g1 PHD_FILE: MSMg01no520_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:28 2005
(675 letters)
>mm_chr11_84233556_84234629
Length = 1074
Score = 1156 bits (598), Expect = 0.0
Identities = 638/656 (97%), Gaps = 11/656 (1%)
Strand = Plus / Minus
Query: 1 tcactaattttaaaatgcagaagaccaccctccctccagccaggaataaattggaaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcactaattttaaaatgcagaagaccaccctccctccagccaggaataaattggaaacta 602
Query: 61 ttttaattgacatggatcctgcaattctgctgcttctagaaagatggattagttgataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttttaattgacatggatcctgcaattctgctgcttctagaaagatggattagttgataga 542
Query: 121 tttgcattttaataaaactaatactttacatttggtagctgatgctgactttgaaatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttgcattttaataaaactaatactttacatttggtagctgatgctgactttgaaatgag 482
Query: 181 ttgagaagttatcgagcgtcccaatcctgagccctctgccgtggcgactggagtggcctt 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgagaagttatcgagcgtcccgatcctgagccctctgccgtggcgactggagtggcctt 422
Query: 241 tttgtgtggggtttgcctacacatcacactcaagcccttgtcctttgccctccagcagga 300
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 421 tttgtgtggggtttgcctacacatcacactcaagtccttgtccttcgccctccagcagga 362
Query: 301 tggtgaggcagtaactgctcaccagagacgggtacaaggtgcagagatggccagcacagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtgaggcagtaactgctcaccagagacgggtacaaggtgcagagatggccagcacagg 302
Query: 361 gtggcatcacagacagctcagaagaacatgatgtcgttgacagagaaagaggtagggcca 420
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 301 gtagcatcacagacagctcagaagaacatgatgttgttgacagagaaagaggtagggcca 242
Query: 421 gcttcttgccttatttttagatttaaaa-aaaacaa--caa-------caaaccatctgt 470
||||| ||||||||||||||||| |||| ||||||| ||| ||||||||||||
Sbjct: 241 gcttcatgccttatttttagatt-aaaacaaaacaaaacaaaacaaaacaaaccatctgt 183
Query: 471 catcccattacctaaaagtaacagctccagccccatagtgtggcacaggcctgaggcaga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 catcccattacctaaaagtaacagctccagccccatagtgtggcacaggcctgaggcaga 123
Query: 531 ggaattgcgagtgtaagactaatctggctaaacagattcagtgctggtgactatatgtta 590
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gggattgcgagtgtaagactaatctggctaaacagattcagtgctggtgactatatgtta 63
Query: 591 ttatagttaagattgttattagatacagtgaagagcttctctgtcctttccatggg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttatagttaagattgttattagatacagtgaagagcttctctgtcctttccatggg 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
