Query= MSMg01no520_h08.b1 MSMg01no520_h08.b1 CHROMAT_FILE:
MSMg01no520_h08.b1 PHD_FILE: MSMg01no520_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
(662 letters)
>mm_chr11_51169689_51170751
Length = 1063
Score = 1228 bits (635), Expect = 0.0
Identities = 653/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Plus
Query: 5 gaattctagggacattctacaaagtgaattctttcaaggtgatctctgagtctcttttca 64
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggggacaccctacaaagtgaattctttcaaggtgatctctgagtctcttttca 264
Query: 65 ggatctctaaaaagagttttcaattttttttt-aaatgtaggcaaaacttttaagaatca 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ggatctctaaaaagagttttcaattttttttttaaatgtaggcaaaacttttaagaatca 324
Query: 124 aatgggaacaggaagtaattcaaataattgctatactttcctctttcattttcagttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgggaacaggaagtaattcaaataattgctatactttcctctttcattttcagttctt 384
Query: 184 gtttccaaatatcaataacagttctatcatgagtgccattccacattcttacctgatagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttccaaatatcaataacagttctatcatgagtgccattccacattcttacctgatagg 444
Query: 244 aaataaacatttctcaatgtctgaacgcagtcttcctagttgctctaagtggcctcacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaacatttctcaatgtctgaacgcagtcttcctagttgctctaagtggcctcacag 504
Query: 304 ccatgcagcaaatgctatgccacagttgttagcatggcactcactcctgagttttgatta 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 ccatgcagcaaatgctatgccacagttgttaacatggcactcactcctgagttttgatta 564
Query: 364 aagcatatatgactcttcatcaaaagaattgtttttgttgaagacaaacgctaggagttt 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcatatatgactcttcatcaaaagaattgtttttgttgaagacaaacgctaggagttt 624
Query: 424 cttttctagaaacattctcttgttctgaacacatggtactgcctaaaaggtttatattaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttttctagaaacattctcttgttctgaacacatggtactgcctaaaaggtttatattaa 684
Query: 484 gttctgcagcacttggagctaaggagacagtttaatcagtaaagagcttgccattcaagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttctgcagcacttggagctaaggagacagtttaatcagtaaagagcttgccattcaagc 744
Query: 544 tgggtggtggtggcgcatgcctttaatttcggcactcaggaggcagaggcaggaggacct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgggtggtggtggcgcatgcctttaatttcggcactcaggaggcagaggcaggaggacct 804
Query: 604 ctgagttcaaggccagcctggtctacagagagagttccagcacagccagggctacacag 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgagttcaaggccagcctggtctacagagagagttccagcacagccagggctacacag 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_h08.g1 MSMg01no520_h08.g1 CHROMAT_FILE:
MSMg01no520_h08.g1 PHD_FILE: MSMg01no520_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
(533 letters)
>mm_chr11_51356943_51357875
Length = 933
Score = 777 bits (402), Expect = 0.0
Identities = 436/448 (97%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 88 gcctggtggtccttcttggatttttaaaaatgtatttatttatttgcatgagtgtgcgtg 147
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 933 gcctggtggtccttcttggatttttaaaaatgtacttatttatttgcatgagtgtgcgtg 874
Query: 148 cacacatatggggctcagagtccgagatttgggcatcagctgtctccttccagtttgtgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cacacatatggggctcagagtccgagatttgggcatcagctgtctccttccagtttgtgt 814
Query: 208 gttttggggatagaactctggtcttcaggcttgacagtgtggacagtgagtgactttgct 267
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 813 gttttggggatagaactctggtcttcaggcttgacagtgaggacagtgagtgactttact 754
Query: 268 cagactatctccctggc--cttttgttttttttttttttgggacaggtggatactggcct 325
| ||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||
Sbjct: 753 cggactatctccctggcttttttttttttttttttttttgagacaggcggatactggcct 694
Query: 326 cgaactcttgatgttcacgcctgcatctctcactgctaggactgtgggtatgaatcactc 385
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 693 cgaactcttgatgttcacgcctgcatctcccactgctaggactgtgggtatgaatcactc 634
Query: 386 tgtctaggttgagtgggtccttcttactgggcctcaccttccctgagatgggcaggaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgtctaggttgagtgggtccttcttactgggcctcaccttccctgagatgggcaggaaaa 574
Query: 446 agccaaaccaacaaaccgacaatgtttagatgcatacagaacccctccacccaacccgag 505
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 agccaaaccaacaaaccgacaatgtttagatgaatacagaacccctccacccaacccgag 514
Query: 506 ctgggtgactgtcttgctttctaactgt 533
||||||||||||||||||||||||||||
Sbjct: 513 ctgggtgactgtcttgctttctaactgt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
