Query= MSMg01no520_j20.b1 MSMg01no520_j20.b1 CHROMAT_FILE:
MSMg01no520_j20.b1 PHD_FILE: MSMg01no520_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
(682 letters)
>mm_chr11_101524517_101525593
Length = 1077
Score = 1180 bits (610), Expect = 0.0
Identities = 663/689 (96%), Gaps = 17/689 (2%)
Strand = Plus / Minus
Query: 1 tcactgcttggcaatagtcttctcatggggagactctggggcgaggcagtcttacgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcactgcttggcaatagtcttctcatggggagactctggggcgaggcagtcttacgttag 931
Query: 61 acagccagcattacacagtgagatgctgtctaaaaagcacgataaaagagactttaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 acagccagcattacacagtgagatgctgtctaaaaagcacgataaaagagactttaaaag 871
Query: 121 acaaagttcaactgggcataaccacagagtgttatcccaggtactctggaggctgaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 acaaagttcaactgggcataaccacagagtgttatcccaggtactctggaggctgaggca 811
Query: 181 ggagacaagacatggataacctctctaggctagatcatgagttcaaggccagcacgagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggagacaagacatggataacctctctaggctagatcatgagttcaaggccagcacgagca 751
Query: 241 acttaacacgaccctatttcagaaacacagatgaaccagtcatgatggcgtagcagcaga 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 750 acttaacacgaccctatttcagaaatacagatgaaccagtcatgatggcgtagcagcaga 691
Query: 301 gagtttgcccagcatgcacagactctgggttctgtcccaagtacctcagtaatcaaacaa 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 690 gagtttgcccagcatgcacagactctgggttctgccccaagtacctcagtaatcaaacac 631
Query: 361 agctcattcctcagcaccagccagagttctagggctacagacacctcaagcctcaaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agctcattcctcagcaccagccagagttctagggctacagacacctcaagcctcaaaggt 571
Query: 421 cacattccgtaatgagtgacagacagcggcagctcaggaagacacaatttatcttttttg 480
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 cacattccataatgagtgacagacagcggcagctcaggaagacacaattt---tttttt- 515
Query: 481 ttttattttttttaacaaatcatcaaatggggacttcagaggga-----------aagaa 529
|||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 514 tttt-tgttttttaacaaatcatcaaatggggacttcagagggatttcagagggaaagaa 456
Query: 530 cgggtcacctagaagtttctgaaaaggtctctagaaatgtagcacttgggtgggggcatc 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 455 tgggtcacctagaagtttctgaaaaggtctctagaaatgtagcacttgggtgggg-catc 397
Query: 590 gtgcttagcagttagttgcagttctgattgtcctgaaggggaggagatgttacaaagggc 649
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 396 gtgcttagcagttagtcgcagttctggttgtcctgaaggggaggagatgttacaaagggc 337
Query: 650 aaggtgaccaanaggacaacaagattacc 678
||||||||||| |||||||||||||||||
Sbjct: 336 aaggtgaccaaaaggacaacaagattacc 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1077
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1067
Effective search space: 717024
Effective search space used: 717024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_j20.g1 MSMg01no520_j20.g1 CHROMAT_FILE:
MSMg01no520_j20.g1 PHD_FILE: MSMg01no520_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
(604 letters)
>mm_chr11_101387524_101388526
Length = 1003
Score = 1147 bits (593), Expect = 0.0
Identities = 601/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 1 agccttttctgcattcattctgtcttcaatgagcaataaactgctggtctcangctgtaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agccttttctgcattcattctgtcttcaatgagcaataaactgctggtctcaggctgtaa 260
Query: 61 tgagctggcatgagcatctgtgccacatggctccacacacacatttgaaatagaaatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctggcatgagcatctgtgccacatggctccacacacacatttgaaatagaaatact 320
Query: 121 ctgacatttttctggatgcctttcagttgcatgattctcagtagggtttaaatcatcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacatttttctggatgcctttcagttgcatgattctcagtagggtttaaatcatcact 380
Query: 181 gcattgatgatattcaatgtttcttatgccctcagaaaactcacaagcagctgaaataca 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattgatgatgttcaatgtttcttatgccctcagaaaactcacaagcagctgaaataca 440
Query: 241 caaaataagaaggttctttaaaatggaattatcacgagaaactacataccagatacaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaataagaaggttctttaaaatggaattatcacgagaaactacataccagatacaact 500
Query: 301 ggggagtaaaaaccaatccactaaccttatttatttaccttttaaattttagatgttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggagtaaaaaccaatccactaaccttatttatttaccttttaaattttagatgttctt 560
Query: 361 aaaaaaaaaaaataagggtctatgtgttttggcttacatccaagtatgtgcaccacaggc 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaaaa-taagggtctatgtgttttggcttacatccaagtatgtgcaccacaggc 619
Query: 421 acgcctggtgcgcaaagaagagaaaagagggctgcagatctcctggaactcgagttttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acgcctggtgcgcaaagaagagaaaagagggctgcagatctcctggaactcgagttttgg 679
Query: 481 atgcttacaaactacccagtgtgggtcctgggaatcaaacccaggtcttctgcaagagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgcttacaaactacccagtgtgggtcctgggaatcaaacccaggtcttctgcaagagga 739
Query: 541 acaagttctcttcactgctttgccagttctccagccccagtccactggcgttttttattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaagttctcttcactgctttgccagttctccagccccagtccactggcgttttttattt 799
Query: 601 cttt 604
||||
Sbjct: 800 cttt 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
