BAC Information

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BAC

Clone NameMSMg01-520O09
Chromosome11 (Build37)
Map Location 30,034,345 - 30,034,785
singlet/doubletsinglet
Overlap geneSpnb2
Upstream genePnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520O09.T7 (MSMg01no520_o09.b1)MSMg01-520O09.TJ (MSMg01no520_o09.g1)
ACCAG591821AG591822
length732747
length of high quality
(start - end)
505 (78 - 582)665 (79 - 743)
definitionCHROMAT_FILE: MSMg01no520_o09.b1 PHD_FILE: MSMg01no520_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:04 2005CHROMAT_FILE: MSMg01no520_o09.g1 PHD_FILE: MSMg01no520_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTAAAATCTAAGTTTGCGGGCGCTATAGGACTCACTATTTCGAAAGGAT
CCGCGGAATTCCTTCTTTTCCATGTCAGGTCTCCTTTTGTGAGTGTAATA
TGCCGTGTTCCTCTGCATGAGGTGCAGATGCTGGGTCCCTAAGGCAGAAG
TAGCTCTTAGACATGTGCATTTGGACAAACATGCTGCTAGCTTTCTACCT
CCATAGCTTATTTATATGTTCCACTGTGCTGCAGCTGTACAGGGCTGTTG
GAAGCCGGTGACTCTGGACACAGCTAGCTGCTGGACTTCAGGGCTTCCTT
AGGATACTCAGGGTTGTTTTTGTTTTTCAGGAAAGCATTTCTGTTTGTCC
TTGGTTATCCTGGAACTCGCTCTGTAGATTGGCCTCAAACTCAGAGATCT
CTTCTGCCTCTGCCTCTCTGCTTCTCTCTCTGCCTCTCTGCTTCTCTCTC
TGCCTCTCTCCCTCTGCCTCTGTACTGAGATTATCTCTGAGTCTACAGAA
CAAGCTCCAGGATAGCCAGGGCTCCACAGAGAAACCCTGTGTGGGGAAGG
AGGTATGTACCACCACACCCAGCGAGGATTTCTCAATTTAAAAATGAAGT
AAGCCGGGCGTGGTGGCACACGCCGTTAATCCCAGTACTCGGGAGGCAGA
GGCAGACGATTTCTGAGTTCGAGGCCAGCCCGGTCTACAAAGTGAGTGCC
AGGACAGCCAGGGCTACACAGAGAAACCCTGT
CACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGTAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAA
GATCAAAAATTCAGGTGACAGCAGATGTTGGAGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCTTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGTTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATT
TCCTAAAGCATCCAAACGCCGACACCATTGCATACACTAGCAAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_o09.b1 MSMg01no520_o09.b1 CHROMAT_FILE:
MSMg01no520_o09.b1 PHD_FILE: MSMg01no520_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:04 2005
         (505 letters)



>mm_chr11_30034345_30035250
          Length = 906

 Score =  733 bits (379), Expect = 0.0
 Identities = 416/441 (94%), Gaps = 21/441 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtctccttttgtgagtgtaatatgccgtgttcctctgcatgaggtgcagatgctgggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtctccttttgtgagtgtaatatgccgtgttcctctgcatgaggtgcagatgctgggtc 382

                                                                       
Query: 61  cctaaggcagaagtagctcttagacatgtgcatttggacaaacatgctgctagctttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaaggcagaagtagctcttagacatgtgcatttggacaaacatgctgctagctttcta 322

                                                                       
Query: 121 cctccatagcttatttatatgttccactgtgctgcagctgtacagggctgttggaagccg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccatagcttatttatatgttgcactgtgctgcagctgtacagggctgttggaagccg 262

                                                                       
Query: 181 gtgactctggacacagctagctgctggacttcagggcttccttaggata-ctcagggttg 239
           ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 261 gtgactctggagacagctagctgctgcacttcagggcttccttaggatagctcagggttg 202

                                                                       
Query: 240 tttttgtttttcaggaaagcatttctgtttgtccttggttatcctggaactcgctctgta 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttgtttttcaggaaagcatttctgtttgtccttggttatcctggaactcgctctgta 142

                                                                       
Query: 300 gattggcctcaaactcagagatctcttctgcctctgcctctctgcttctctctctgcctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gattggcctcaaactcagagatctcttctgcctctgcctctctgcttctctctctgcctc 82

                                                                       
Query: 360 tctgcttctctctctgcctctct--------------------ccctctgcctctgtact 399
           |||||||||||||||||||||||                    |||||||||||||||||
Sbjct: 81  tctgcttctctctctgcctctctgcttctctctctgcctctctccctctgcctctgtact 22

                                
Query: 400 gagattatctctgagtctaca 420
           |||||||||||||||||||||
Sbjct: 21  gagattatctctgagtctaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space:   443520
Effective search space used:   443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)