Query= MSMg01no521_g18.b1 MSMg01no521_g18.b1 CHROMAT_FILE:
MSMg01no521_g18.b1 PHD_FILE: MSMg01no521_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:45 2005
(561 letters)
>mm_chr11_54482788_54483744
Length = 957
Score = 996 bits (515), Expect = 0.0
Identities = 546/559 (97%), Gaps = 8/559 (1%)
Strand = Plus / Plus
Query: 5 gaattctttctgtactcactttatagctgaggctggtctagaactcatgatcttgcctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctgtactcactttatagctgaggctggtctagaactcatgatcttgcctct 264
Query: 65 acttccaattgctggtattacaggtgtacactgccacacccaaaacgagaatgctttttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttccaattgctggtattacaggtgtacactgccacacccaaaacgagaatgctttttt 324
Query: 125 aatttgatactttgtgtactataaagactactacagaggctggagagatggctcagcggt 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 aatttgatactttgtgtactataaagactactacagaggctggagaggtggctcagcggt 384
Query: 185 taagagcactgactgctctt-tcaaaggtcctgagttcaaatcccagcaaccacatggtg 243
||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 385 taagagcactgactgttcttctgaa-ggtcctgagttcaaatcccagcaaccacatggtg 443
Query: 244 gctcacaaccacctgtaattggatctaatgccatcttctggtgtgtctgaagacagctac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctcacaaccacctgtaattggatctaatgccatcttctggtgtgtctgaagacagctac 503
Query: 304 agtgcacttacatataacaataaataaatctttttttttaaa-gactactacagatttat 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 agtgcacttacatataacaataaataaatctttttttttaaaagactactacagatttat 563
Query: 363 gtatagagtttatagaaagtatattaagctatttccagtaatttttgtagtcttcagcat 422
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtatagagtttatagaaagtgtattaagctatttccagtaatttttgtagtcttcagcat 623
Query: 423 gtaatgtaagtagacattacagttgctaacttttttttatcagattttccttttggacct 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtaa-----gtagacattacagttgctaacttttttttatcagattttccttttggacct 678
Query: 483 ctccaaatagggcattaataaataaaataattttaagtacatataattgctatgatttta 542
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 679 ctccaaatagggcattaataaataaaataattttaagtatatataattgctatgatttta 738
Query: 543 aaatacatatattctaaga 561
|||||||||||||||||||
Sbjct: 739 aaatacatatattctaaga 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 957
Length adjustment: 10
Effective length of query: 551
Effective length of database: 947
Effective search space: 521797
Effective search space used: 521797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_g18.g1 MSMg01no521_g18.g1 CHROMAT_FILE:
MSMg01no521_g18.g1 PHD_FILE: MSMg01no521_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:45 2005
(563 letters)
>mm_chr11_54641038_54642000
Length = 963
Score = 1046 bits (541), Expect = 0.0
Identities = 559/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Minus
Query: 1 ttaattctttagaaccttctaaacccactttacatgccaatccaacaatacagataagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttaattctttagaaccttctaaacccactttacatgccaatccaacaatacagataagaa 889
Query: 61 agaaatgttaaaaacaaaaaaataaaagcaattctaaggaactgtc-tatgtgacaacag 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 888 agaaatgttaaaaacaaaaaaataaaagcaattctaaggaactgtcttatgtgacaacag 829
Query: 120 aattgtacaaaatgcattgttcagtgaagtgacattataaaaagcatgctgttgcttggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aattgtacaaaatgcattgttcagtgaagtgacattataaaaagcatgctgttgcttggt 769
Query: 180 gtgttggcacacccctttaatctcagcacttgggaagcagagataagtggatctctgtga 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 768 gtgttggcacacccctttaatctcagcacttgggaagcagagacaagtggatctctgtga 709
Query: 240 attcgaggccagtctggtctgcatagctaattccagaacag-catggctatgcagagaaa 298
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 708 attccaggccagtctggtctgcatagctaattccagaacagccatggctacgcagagaaa 649
Query: 299 ccctgtcagctcacagctgtggtcctcgtaaggcatcattagacagtacctgactgttct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccctgtcagctcacagctgtggtcctcgtaaggcatcattagacagtacctgactgttct 589
Query: 359 gaaggttacggctaaacagttgtttgttttatgaaaattcattgagtgtgtgcagctgtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaaggttacggctaaacagttgtttgttttatgaaaattcattgagtgtgtgcagctgtg 529
Query: 419 atttgtgtgaattttggtgtatattttcaagacaggttctcatgtgtcccaggctggcct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atttgtgtgaattttggtgtatattttcaagacaggttctcatgtgtcccaggctggcct 469
Query: 479 caagttattatgtagctgaggatggctttgaatttctgatcttcttgccatcctttccca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caagttattatgtagctgaggatggctttgaatttctgatcttcttgccatcctttccca 409
Query: 539 agtactgggattttagtcatgagtc 563
||||||| |||||||||||||||||
Sbjct: 408 agtactgagattttagtcatgagtc 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
