Query= MSMg01no521_l07.b1 MSMg01no521_l07.b1 CHROMAT_FILE:
MSMg01no521_l07.b1 PHD_FILE: MSMg01no521_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
(539 letters)
>mm_chr11_40400386_40401324
Length = 939
Score = 926 bits (479), Expect = 0.0
Identities = 523/543 (96%), Gaps = 9/543 (1%)
Strand = Plus / Minus
Query: 6 actgactcttacgcgttgtcctctgacctccacatttgcatgtggtattgtgcatggaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 actgactcttacgcgttgtcctctgacctccacatttgcatgtggtattgtgcatggaca 880
Query: 66 catatttcccttctactgtatacatataataaagacaaaaaacccaattgatcatacttg 125
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 879 catatttcccttctactatatacatataataaagacaaaaaacccaattgatcatatttg 820
Query: 126 taacacactttttgagtatctgcattcattttaattggtttttcatagaaaattctgtct 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 819 taacacactttttgagtatctgcattcattttaattggtttttcatagaaaattctgtat 760
Query: 186 atctgtgaata---------cttccatccgatagtttgcatcattggctctcttattgac 236
||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 759 atctgtgaatacttatagttcttccatctgatagtttgcatcattggctctcttattgac 700
Query: 237 ttgtctctttctagtttagctctctgtgactgagtcagggctagcttctgacttaaaagg 296
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttgtctccttctagtttagctctctgtgactgagtcagggctagcttctgacttaaaagg 640
Query: 297 aaacattcttctttcttccttatgtattctgtttgctgtaactttctgtcttgaaattat 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaacattcttttttcttccttatgtattctgtttgctgtaactttctgtcttgaaattat 580
Query: 357 ttatcaggtcaaggaactacctttcgctcctccatttactgcctgtgttttatttcttat 416
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 579 ttatcaggttaagaaactacctttcgctcctccatttactgcctgtgttttattttttat 520
Query: 417 catttttattgcatattgacaagtcatagctgattttttgggttcaaagtgatataattt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catttttattgcatattgacaagtcatagctgattttttgggttcaaagtgatataattt 460
Query: 477 ttttccttttgagacatctcattgtgcagttcatcctggcctggcacttcctatgtcact 536
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 459 ttttccttttgagacatctcattgtgcagctcagcctggcctggcacttcctatgtcact 400
Query: 537 tta 539
|||
Sbjct: 399 tta 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l07.g1 MSMg01no521_l07.g1 CHROMAT_FILE:
MSMg01no521_l07.g1 PHD_FILE: MSMg01no521_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
(570 letters)
>mm_chr11_40246588_40247557
Length = 970
Score = 866 bits (448), Expect = 0.0
Identities = 531/570 (93%), Gaps = 22/570 (3%)
Strand = Plus / Plus
Query: 9 gtaatgagatagaaagaaaaggattaggcacaaaaacttagagtgaaaggtataactcta 68
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 209 gtaatgagatagaaagaaaaggaccaggcacaaaaacttagagtgtaaggtataactcta 268
Query: 69 caatctctgctcaattcctgtggatccgaaactgttgtaaaaatgtaaaagcatatttta 128
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 caatctctgctcaattcctgtggatctgaaactgttgtaaaaatgtaaaagcatatttta 328
Query: 129 aagaccccaccagggacattcattttttgccaagcc-------taacctccatacaattg 181
||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct: 329 aagaccccaccaggggcattcattttttgccaagccaaatctataacctccatacaatgg 388
Query: 182 aaagcagaatct-aaaattaaaataaataaataaataaataaataaataaaactttacct 240
||||||||| || |||||| | | |||| |||||||||||||||||||
Sbjct: 389 aaagcagaaactaaaaatt--------t---t---taaaaaaataaataaaactttaccc 434
Query: 241 tgctctctcccatgggctcgtcatctcagacaacactttcccttgctaaccatttggacc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 tgctctctcccatgggctcgtcatctcagacaacactttcccttgcttaccatttggacc 494
Query: 301 tctctccattttcactggctattgaattgccaggttaaatattttgtctctccccttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctctccattttcactggctattgaattgccaggttaaatattttgtctctccccttttg 554
Query: 361 atcttggttgcactggtgcatttgtaattacagtttaatatttgatgtgccatgatatgg 420
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 atcttggttgcactgttgcatttgtaattatagtttaatatttgatgtgccatgatatgg 614
Query: 421 tactacagggaccagtgtgtttcattacctgaactctcagtttctccttcagtattctta 480
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 tactacagggaccagtgtgtctcattacctgaactctcagtatctccttcagtattctta 674
Query: 481 cctagtatgcactgataacgcactcctgagtgacacaatacctatgtctcttttgagatt 540
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 cctagtatgcactgatagcgcactcctgagtgacacaatatctatgtctcttttgagatt 734
Query: 541 tttttcaactgtcttgacgtgactaaacac 570
||||||||||||||||| ||||||||||||
Sbjct: 735 tttttcaactgtcttgatgtgactaaacac 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
