BAC Information

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BAC

Clone NameMSMg01-521M07
Chromosome11 (Build37)
Map Location 69,500,195 - 69,500,404
singlet/doubletsinglet
Overlap geneTnfsf12-tnfsf13, Tnfsf12
Upstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf13
Downstream geneLOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M07.T7 (MSMg01no521_m07.b1)MSMg01-521M07.TJ (MSMg01no521_m07.g1)
ACCAG592486AG592487
length759752
length of high quality
(start - end)		210 (162 - 371)361 (82 - 442)
definitionCHROMAT_FILE: MSMg01no521_m07.b1 PHD_FILE: MSMg01no521_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:12 2005CHROMAT_FILE: MSMg01no521_m07.g1 PHD_FILE: MSMg01no521_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTCCTTAATTTTGCGGCGCTTATCAACTCATTTTTTCGAGAGGATC
CGCGGAATTCTCAGCCTTGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTT
GTGCCAGGTGTCTGGGCTGTTGCCGCTGCGGCCCAGGTCTTCCCTTCGGA
TCCGCACCCTCCCCTGGGCTCATCTTAAGGCTGCCCCCTTCCTAACCTAC
TTTGGACTCTTTCAAGTTCACTGAGGGGCCTTGCTCTCCCAGATTCCTTA
AACTTTCCCTGGCTCCAGGAGCATCACCACACCTCCCTACCCCACCCCCA
CTCCTCCACCCCCTCGCTGCTCCTTGGTCCAGTCCTGTCCTCTCCTCAAA
GGCAGCCAGAGCTTGTTCACATGTCTTCCATTCCACAGACGTATCCTTGC
TCTTCTTTAACATCCCATCCCACCACAACTATCCACCTCACTAGCTCCCA
AAGCCCCTACTTATCCCTGACTCCCCCCCTATCCACTCGATCATGTGTTT
ATTGATCTTGTGTTTTATTTTTTGAGATGCGCTGGATTTGGTGTTTTTTT
GTCTGAGTTTCCGTTTCCATTCTTTATTTTTTTTTCTGTCTACGCCGCAC
ACTATGGTTACATTCTTTTAACTGATACCCCCGCGCACCTCGAAGTTTTT
TTTTTGCTCCATTATTCCTCTTCTTTTCTCTCCCAATTCTATCCCTCTTC
TCTTCTCCATTACCCCTTTCTTTTCTCTCTTTGCCTTCTTCTCCTCTTTT
TCCTCTTTN

TTTTTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATTCCCAGCATCCATGT
AAAAGCTGCGCACAGTGGCCTGTGTCCCTAATCCCAGCCCTGGCTTGGTG
GGAAAAGACAAGGCAGGTCCCTGGCGCTGGCTGACCAGTGACACTAGGTC
AATAGGTGTGGATCAGCAAGAGACCTGACAAACATATAACATGGAGTTGG
AGAGACTGCTCAGCAGTTAGAAGCACTGGCTACTCTTGTAGAGGACCTAT
AGGTTCTGTTCCCACGCCCACATGACAGCTCACAACCATCCGTAACTCCA
GTTCTGTGGGACCCCATGCCTTCTTCTGGCTTCCTTGAGCACTGCATGCA
CGTGGTAGACAGACATTCAGGCAAAACACCCATGCACATAAAATAATCGA
TTTAAAAAAAAAATTAAGTTCCCAGCACTCAGGAGCCAGATGCAGGGGGA
TCTCTGAGTTTGAGGACAGACTGCATCTACAGAGAGAGTTCCAGGACATC
CAGAGCCACCCATAGAAACCTTTGTCTCCTTAAAACTAATATTATAATAT
ACCACCCAGTTATTAACTTATTGATGATGATAACCTAGGTTCTCTCTCTG
GTCCGCCCATGTTCCCGCCCTTCTCTTGTTACATGTGTCTTAGACCACTC
CCACTTTGTTTACACCTCTCTCAAGGAACCCTTTGCATTTTCCCACCCAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m07.b1 MSMg01no521_m07.b1 CHROMAT_FILE:
MSMg01no521_m07.b1 PHD_FILE: MSMg01no521_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:12 2005
         (210 letters)



>mm_chr11_69499995_69500604
          Length = 610

 Score =  406 bits (210), Expect = e-118
 Identities = 210/210 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgggctcatcttaaggctgcccccttcctaacctactttggactctttcaagttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccctgggctcatcttaaggctgcccccttcctaacctactttggactctttcaagttcac 351

                                                                       
Query: 61  tgaggggccttgctctcccagattccttaaactttccctggctccaggagcatcaccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgaggggccttgctctcccagattccttaaactttccctggctccaggagcatcaccaca 291

                                                                       
Query: 121 cctccctaccccacccccactcctccaccccctcgctgctccttggtccagtcctgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctccctaccccacccccactcctccaccccctcgctgctccttggtccagtcctgtcct 231

                                         
Query: 181 ctcctcaaaggcagccagagcttgttcaca 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 ctcctcaaaggcagccagagcttgttcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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