BAC Information

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BAC

Clone NameMSMg01-521O18
Chromosome11 (Build37)
Map Location 105,707,576 - 105,707,967
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneLOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, LOC667737
Downstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521O18.T7 (MSMg01no521_o18.b1)MSMg01-521O18.TJ (MSMg01no521_o18.g1)
ACCAG592602AG592603
length745748
length of high quality
(start - end)		655 (44 - 698)651 (76 - 726)
definitionCHROMAT_FILE: MSMg01no521_o18.b1 PHD_FILE: MSMg01no521_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:23 2005CHROMAT_FILE: MSMg01no521_o18.g1 PHD_FILE: MSMg01no521_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCATCTGGACAGAAAATCTAGCTTACATAACAACTGACATTTGTATCT
TTTANATTCTATAGTGATATTAGCTCTTCCTTTCAGTCAGCTCTCATATT
CTTAAGCCCACCCACCACTCAATACTCTGGATTTATTTGTTTATCTTTCA
ACTATTAAGTCAGCTAAGAAAACAAACAAGCAAACCTGGAAATCACTCTG
CAGATGGCACTGGCCTTATGGTGATGATCCTCCTTTATCAGTCTCCTGAA
TGGTGAGATTAAAGTGTGGATCACTGGGGTAAGAGAGATGTTTAGCGGCT
AAGAGCACTGGCTGCTCTTCCCAAGGATCTGAGTTCAATTCCCAGCATGC
ATATGGCTACTCAGAGCTCTCTATAGCACTGGTTCCTAAAATTCCTCTTC
TGGTCTCCTTACACAACAGCAGACCATGTGTTTGTTGCACAACATGCAAG
CAAAATGCCCATCATGTAAAGTAAAATGTGAGCTACCACCACACAAGTTA
CTTTAGTATTTCTAGAAATCTGAAGGCTCATTGTAAATAACTACTTTATC
TTCCTTTATTCTTGTCTCTTAACTCTGATTTTAATCTTCACTTTGGGACT
GGAGGCTAACAATAGTTCCCAGGCTTGGGTTGTTTCAGTAATTTTCCAGT
TTAGAGCCCTATCTTCTCTTCCTTTTTTTTTTCCCCCTCATTTTN

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATG
GATTTTCATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGAATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAA
AAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATT
TATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAA
CTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCC
ATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGA
TCTGATGGTGNTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_o18.b1 MSMg01no521_o18.b1 CHROMAT_FILE:
MSMg01no521_o18.b1 PHD_FILE: MSMg01no521_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:23 2005
         (655 letters)



>mm_chr11_105707576_105708631
          Length = 1056

 Score =  745 bits (385), Expect = 0.0
 Identities = 390/392 (99%), Gaps = 1/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcatctggacag-aaaatctagcttacataacaactgacatttgtatcttttana 63
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 392 ggaattcatctggacagaaaaatctagcttacataacaactgacatttgtatcttttaaa 333

                                                                       
Query: 64  ttctatagtgatattagctcttcctttcagtcagctctcatattcttaagcccacccacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttctatagtgatattagctcttcctttcagtcagctctcatattcttaagcccacccacc 273

                                                                       
Query: 124 actcaatactctggatttatttgtttatctttcaactattaagtcagctaagaaaacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 actcaatactctggatttatttgtttatctttcaactattaagtcagctaagaaaacaaa 213

                                                                       
Query: 184 caagcaaacctggaaatcactctgcagatggcactggccttatggtgatgatcctccttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caagcaaacctggaaatcactctgcagatggcactggccttatggtgatgatcctccttt 153

                                                                       
Query: 244 atcagtctcctgaatggtgagattaaagtgtggatcactggggtaagagagatgtttagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atcagtctcctgaatggtgagattaaagtgtggatcactggggtaagagagatgtttagc 93

                                                                       
Query: 304 ggctaagagcactggctgctcttcccaaggatctgagttcaattcccagcatgcatatgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ggctaagagcactggctgctcttcccaaggatctgagttcaattcccagcatgcatatgg 33

                                           
Query: 364 ctactcagagctctctatagcactggttccta 395
           ||||||||||||||||||||||||||||||||
Sbjct: 32  ctactcagagctctctatagcactggttccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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