Query= MSMg01no522_o01.b1 MSMg01no522_o01.b1 CHROMAT_FILE:
MSMg01no522_o01.b1 PHD_FILE: MSMg01no522_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:36 2005
(578 letters)
>mm_chr11_111251854_111252831
Length = 978
Score = 880 bits (455), Expect = 0.0
Identities = 509/559 (91%), Gaps = 49/559 (8%)
Strand = Plus / Minus
Query: 20 tcccaaagaactactaaatatatctaaggtcatgtgacttggtacattttatagtattca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tcccaaagaactactaaatatatctaaggtcatgtgacttggtacattttatagtattca 919
Query: 80 ataatttacatggccttgatggataaaatcacttaaacatgctaaataacttggttttaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 918 ataatttacatggccttgatggataaaatcacttaaacatgctaaataacttggtcttaa 859
Query: 140 atcatcataaagaattaccaactaatctcttctcagattaatataatataatataataat 199
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 atcatcataaagaattaccaactaatctcttctcagattaatat---------------- 815
Query: 200 ataatataaataatataataatatgataatataaataataataataataataataataat 259
|||||||||||||||||||||||||||
Sbjct: 814 ---------------------------------aataataataataataataataataat 788
Query: 260 aataacaattgctatttaatgtccctgtcattaaacataattgatttgtctgtaaatcct 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aataacaattgctatttaatgtccctgtcattaaacataattgatttgtctgtaaatcct 728
Query: 320 ctacatagtagtgaactcctgttgaaattttcctcagtaactcctgtctcactaggacat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctacatagtagtgaactcctgttgaaattttcctcagtaactcctgtctcactaggacat 668
Query: 380 tcatctagtcatgtacatttctctttagagtaactcatatgcatctgtgatacagcctct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcatctagtcatgtacatttctctttagagtaactcatatgcatctgtgatacagcctct 608
Query: 440 aagaatcttagaatcaatgttccctagacagaccccaaacaaaaatattacatttggaga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aagaatcttagaatcaatgttccctagacagaccccaaacaaaaatattacatttggaga 548
Query: 500 agattagaggcagcctgatcatagtcagactgtctgggaatcttgtaaatggctgttccc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agattagaggcagcctgatcatagtcagactgtctgggaatcttgtaaatggctgttccc 488
Query: 560 ttgcacgcaaatcaggtga 578
|||||||||||||||||||
Sbjct: 487 ttgcacgcaaatcaggtga 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_o01.g1 MSMg01no522_o01.g1 CHROMAT_FILE:
MSMg01no522_o01.g1 PHD_FILE: MSMg01no522_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:36 2005
(648 letters)
>mm_chr11_111101066_111102112
Length = 1047
Score = 1216 bits (629), Expect = 0.0
Identities = 644/649 (99%), Gaps = 2/649 (0%)
Strand = Plus / Plus
Query: 1 atcttggcagctggctccagggatctcatgtcactgcctactatgtactgagattacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atcttggcagctggctccagggatctcatgtcactgcctactatgtactgagattacaga 259
Query: 61 ccatttgccatgactgatcagattttacgtggactctgaactctgtcttttatccttgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccatttgccatgactgatcagattttacgtggactctgaactctgtcttttatccttggg 319
Query: 121 tggtggtaactactttatccactaagccaacattctaagacttttttttt-cctacatga 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 tggtggtaactactttatccactaagccaacattctaagacttttttttttcctacatga 379
Query: 180 tgcccaaatagccatggcgagggcaaccatgcatattcttatccagatgtattttcctta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcccaaatagccatggcgagggcaaccatgcatattcttatccagatgtattttcctta 439
Query: 240 ctagatgaagatgggtgaatattagttttctgataggtctgtaaaaaatattttaaaatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctagatgaagatgggtgaatattagttttctgataggtctgtaaaaaatattttaaaatt 499
Query: 300 aaatgatcacatactttatcaggttaaaattaagtctgtgaactaattgatgaaatatct 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatgatcacatactttatcaggctaaaattaagtctgtgaactaattgatgaaatatct 559
Query: 360 cagactctggcatgagataaggtgtgcagaaatcttttgaactccttttaaaaaatactt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagactctggcatgagataaggtgtgcagaaatcttttgaactccttttaaaaaatactt 619
Query: 420 ataaaattgaagacaaactctcgcctggctgttcctctgattcatgtgtctctccactag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 620 ataaaattgaagacaaactctcgcctggctgttcctctgattcatgtgtctctcc-cgag 678
Query: 480 tcattgctctgcccatgcaataaacgactgtcatttaaaatttttatgagtccatcaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcattgctctgcccatgcaataaacgactgtcatttaaaatttttatgagtccatcaatt 738
Query: 540 agatgtgagaacaaagaagcaaagattaaaatgcaaatctaacagctctaggtgtgtgct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agatgtgagaacaaagaagcaaagattaaaatgcaaatctaacagctctaggtgtgtgct 798
Query: 600 ggttcatatcacagcaagaatacgaggtcagctgccatggtagcagaaa 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggttcatatcacagcaagaatacgaggtcagctgccatggtagcagaaa 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
