BAC Information

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BAC

Clone NameMSMg01-523E12
Chromosome11 (Build37)
Map Location 70,925,639 - 70,925,935
singlet/doubletsinglet
Overlap geneNlrp1a
Upstream geneMgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
Downstream geneNlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523E12.T7 (MSMg01no523_e12.b1)MSMg01-523E12.TJ (MSMg01no523_e12.g1)
ACCAG593638AG593639
length744736
length of high quality
(start - end)
371 (48 - 418)297 (47 - 343)
definitionCHROMAT_FILE: MSMg01no523_e12.b1 PHD_FILE: MSMg01no523_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:08 2005CHROMAT_FILE: MSMg01no523_e12.g1 PHD_FILE: MSMg01no523_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTACCTCTGAGCCCCATTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGCTCTTTATATATATAGGATATTAGTCCC
TTATCTGATTTAGGATTAGCAAAGATACTTTTCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGTAATTTTA
TGAAGTCCCATTTGTCAATTCTCTATCTTACACCACAAGTCATTGCTGTT
CTACTCAGGAAATTTTCCCCTGTGCCCATATCTTCTAGGCTTTTCCCCAC
TTTCTACTATATAAGTTTCACCGTCTCTGGTTTTATGTGGCGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGA
ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAA
GCTGCCTTTTTTCCACTGGGTGGGTTTTGCTCCCTTGGCAAAGATCAAGT
GACTGTAAGTGTGTGGGTTCATTTCTGGATCTTCCATTCTATTCCCTTGG
GCTACTTGTTTGTCGCTATACCCCTATCATGCAGGTTTTAATCTCAATTG
CTCTTGTAGACAGGTTTATGTTAGACAAGGTGATTCCCCCTAAGGGTCCT
TTTATTTTGGATAAAAATTTTGCTTTCCTAAGTTTTTTGTTATT
GCCTGTTCGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATG
TAATTGAGTTGTCTGGGAGGCAGATCTTCAGTAAAGTCCAGTCCTGGACT
TCTTTATTGTATGAGGAACAGTCATGCCTAAAAAAACTTGCTGAGGAACA
AATGTGCCTACCAGCTGAGCCTGTTTCCTCTACCAGAGGTGAGAAAATAA
GGATCTTCAATGCAAAACTGCTCCTAAGGTTTGAAGGTTGCAGGAGAAGG
CCAGACAGAGGGAAACCCCAGGGCACAGGCTTGCTTGACTCTTCCTGTTG
GCTGGAAGAACAAGCAGGCCCTGGGTACAGGGGTATGTAGCATCTGTGGG
TCTCTAAGCTCATGATGGCCACTGGCCAGCAACCTCTGGGAAGTGTTCCT
CTAGAAATGGTCTGGACTTGTGTTGGAAAGGTGGAGGGACCATATAGGAA
GCCACTTTTAGACAGCATGTATGGCTGTATGGAGAAAGACACATATTTCC
AGGGCTGTAGTTTGTGAGCTTTCTTAATTTGTATGGAATTCTAAACCAGG
AGGAATGGGACCGTTTTTGGTGCCGGAAACTATCTCTCACTAATGGTAGT
CAACCCCCGGGGACTCTTCTATGGGGAATTATTGGGTCTAGGGACCTATC
CTTTTTTCAGAGACCTTTCCCCAACTTTTTTGTTTTGCCCTGGATCCGCT
CGGGTCTCCTACTTTGTGCTGAAACCAAGCTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_e12.g1 MSMg01no523_e12.g1 CHROMAT_FILE:
MSMg01no523_e12.g1 PHD_FILE: MSMg01no523_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:09 2005
         (297 letters)



>mm_chr11_70925439_70926135
          Length = 697

 Score =  574 bits (297), Expect = e-168
 Identities = 297/297 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtaattgagttgtctgggaggcagatcttcagtaaagtccagtcctggacttcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtaattgagttgtctgggaggcagatcttcagtaaagtccagtcctggacttcttta 260

                                                                       
Query: 61  ttgtatgaggaacagtcatgcctaaaaaaacttgctgaggaacaaatgtgcctaccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatgaggaacagtcatgcctaaaaaaacttgctgaggaacaaatgtgcctaccagct 320

                                                                       
Query: 121 gagcctgtttcctctaccagaggtgagaaaataaggatcttcaatgcaaaactgctccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctgtttcctctaccagaggtgagaaaataaggatcttcaatgcaaaactgctccta 380

                                                                       
Query: 181 aggtttgaaggttgcaggagaaggccagacagagggaaaccccagggcacaggcttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtttgaaggttgcaggagaaggccagacagagggaaaccccagggcacaggcttgctt 440

                                                                    
Query: 241 gactcttcctgttggctggaagaacaagcaggccctgggtacaggggtatgtagcat 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactcttcctgttggctggaagaacaagcaggccctgggtacaggggtatgtagcat 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)