Query= MSMg01no523_j15.b1 MSMg01no523_j15.b1 CHROMAT_FILE:
MSMg01no523_j15.b1 PHD_FILE: MSMg01no523_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:34 2005
(654 letters)
>mm_chr11_104128101_104129154
Length = 1054
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 gtgtttttatttgtgagttcattacaataaaattatattttttaaagagcagaatttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgtttttatttgtgagttcattacaataaaattatattttttaaagagcagaatttgaa 261
Query: 61 ttcagctttatgatttcttaaaaattttgagttcattacaataaaattatatttattaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcagctttatgatttcttaaaaattttgagttcattacaataaaattatatttattaaa 321
Query: 121 aaacaacaacaacaaaaccgaataagctggctatgatatctcaggcctttagtcccagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaacaacaacaacaaaaccgaataagctggctatgatatctcaggcctttagtcccagca 381
Query: 181 cttgggaggcaaaggcaggcaggtctacaacatgagttccagagttccaggatagtcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttgggaggcaaaggcaggcaggtctacaacatgagttccagagttccaggatagtcagg 441
Query: 241 gctacacagagaaaattggtctcaaaaaacaaaatagaaaaaaaaaaaaaaaactcagaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 gctacacagagaaaattggtctcaaaaaacaaaatagaaaaaaaaaaaaaaa-ctcagaa 500
Query: 301 tttaaatctagatctgtcagccacagcctgtattttaataccttccacccccaataaccg 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaacctagatctgtcagccacagcctgtattttaataccttccacccccaataaccg 560
Query: 361 atttccaagattagatgttctatctatgactttcatccccagaacacatgataactattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttccaagattagatgttctatctatgactttcatccccagaacacatgataactattg 620
Query: 421 tttaggaatgagcccacggcaattccaaatacacctatttctgctttgtcacagctgtct 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaggaacgagcccacggcaattccaaatacacctatttctgctttgtcacagctgtct 680
Query: 481 ggtccctgccaacagaccagggaagtaggtcacggctgcagggaccacgcgctggctgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtccctgccaacagaccagggaagtaggtcacggctgcagggaccacgcgctggctgct 740
Query: 541 gcttctgtttcagggaccaggggtggtcaaagcctgccaggagtatcaccctccactggc 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttctgtttccgggaccaggggtggtcaaagcctgccaggagtatcaccctccactggc 800
Query: 601 cctgcttgggtttcatatcctgagcttggggagccgtgaccaggtctcacagtg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctgcttgggtttcatatcctgagcttggggagccgtgaccaggtctcacagtg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_j15.g1 MSMg01no523_j15.g1 CHROMAT_FILE:
MSMg01no523_j15.g1 PHD_FILE: MSMg01no523_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:34 2005
(432 letters)
>mm_chr11_104281860_104282691
Length = 832
Score = 812 bits (420), Expect = 0.0
Identities = 426/428 (99%)
Strand = Plus / Minus
Query: 5 gaggagaataaaataccatgagacaacgtgaaacttagtgtccaatacataacaatgtag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaggagaataaaataccatgagacaacgtgaaacttagtgtccaatacataacaatgtag 573
Query: 65 ggtaaacgctgtgtgatagaaatgaagtaggaagagattttagcagaaaaatggaattag 124
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 572 ggtaaatgctgtgtgatagaaatgaagtaggaagagattttagcagaaagatggaattag 513
Query: 125 aaaaaaaatggatattagaaccatgaatggtagtttagattttgataggcagatttttgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaaaaaaatggatattagaaccatgaatggtagtttagattttgataggcagatttttgg 453
Query: 185 agaaaattggaaatatggtctaaagaggttgatcaatacaagcagatggaataacacaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agaaaattggaaatatggtctaaagaggttgatcaatacaagcagatggaataacacaca 393
Query: 245 gtggaaagacagttcaagagttacaggactgatgtctagggaacattttggagaccagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtggaaagacagttcaagagttacaggactgatgtctagggaacattttggagaccagtc 333
Query: 305 agaatgggtagaggtgatatatatactataagaggaaaggagataaattctaggtgtcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaatgggtagaggtgatatatatactataagaggaaaggagataaattctaggtgtcac 273
Query: 365 tcagccacacctcctaccccagcttccagcatctttttagatagtattttatgttttctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcagccacacctcctaccccagcttccagcatctttttagatagtattttatgttttctc 213
Query: 425 atttagtc 432
||||||||
Sbjct: 212 atttagtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
