BAC Information

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BAC

Clone NameMSMg01-523L11
Chromosome11 (Build37)
Map Location 25,202,622 - 25,323,519
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L11.T7 (MSMg01no523_l11.b1)MSMg01-523L11.TJ (MSMg01no523_l11.g1)
ACCAG593967AG593968
length744749
length of high quality
(start - end)
241 (201 - 441)380 (79 - 458)
definitionCHROMAT_FILE: MSMg01no523_l11.b1 PHD_FILE: MSMg01no523_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:43 2005CHROMAT_FILE: MSMg01no523_l11.g1 PHD_FILE: MSMg01no523_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,202,622 - 25,202,862)(25,323,140 - 25,323,519)
sequence
ATACTATTATTTGAGGCGGCAATCCGACTCCTTTTCCAAAGAGGATCCGC
GGAATTCTCTTTTCGCTTTTTTTTTTCTTATCAACATGTCATGTGTGTCT
TGGTTTGCAAGCCAACCCATATTATTGTCATTGCTAGGTTTAATGATTAA
TTCAGTAGATGCGTGGCTTTTCCACTCATGACCTCTCTCCCCAGTGACTC
TAGCTTGTGAGCACACTTGGGAATGTTTCTGTACCTGCGCCTACTTGCTC
AATTATTTCCAAAGGACAAACTCTTCATGGTAGATTTCCAAAGTCACAAG
GTTTAAGGTTCTGATAAATTGTCATATATCTGCAAGGAGCATTTCTTCAT
CTAACCTCTCAGCATCTCTTTAGAAAAGTAAGAAAACACACCCCTGCAAA
TATGGATATTTTAATTTTAAAATAACCTATTTCCATATGCTCTGATATAG
GACACTATTTTTATTGTTCTTGTGAGCAGGTATCCTAGTTGTAGAAAGAA
TGAAACTTTCCTCTGTTTTCACTGTATGTTTGTCCACTTAAGATTCTGAC
TCCAACTACCTATTCAGATTTTTATCACACCATCTTTCACTTTTCTTTAA
TAACTGAACTCTTCATAAAAACTCTTAGCCATCCCGCGGTACTACCATAT
AATTAATACTTTGAATTGATATTCAATTAGACATATTATATAATGATACC
CCTGTTGACAACTAGTTTGGACATACTTTTTCCAGACCATTTAA
AGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAAAACATATGCCACAT
ACAACCTTGTAACCAAATCCTTAGAGTCTATGGTATATTGCCAGTAAAAT
GCCTTGGCCAAGCTTCAGTTCTGCCTGATGTCACATCTATATGAGCCCTG
TGATAGCATTAAACTGGCCGCAGCTGTTTCTGATTGAAGCACTGTAGACC
TCTGCAAGCAGGGCTCACCTCTTCTCCAACCATTCCCACCCTCCTCTGGA
GTGACATTAACAAAGAGACCCCTCTATCAACACAAGCCCTTGAGTTCTGC
TGACTATTCGCCCAGCAATTTCTGGCGGGTTGGCTTAAGCTTGGAGTGCT
TGTGTATATACACATTCAAGTAAGCATGTGTGTGCTAGCATAGGTACGCA
TGTGCACACAAAGGTCTAGGAAGGGCTCTACATATTCTTTTGGTCTGTGT
GCTGAGAGTCAAAGCAAATACCTTGAATCTTCCTTTCTGGAAACAATGGT
CTAATCCAGCCCCAACAGCTGCTGAAAAAGGTCAGATCTCTCTATCAAAA
GTAAATAAATAGCGTTGAAATGGGCAGCGTACACTTTTGCTAACATTTAA
GCCCCCATGTGCCTATATACTAATGCTCTTAGTTTAACAGAGAATCCTTG
AACTGTTTTCTTTCAAAGGCAAAACAGCTGGTGATTTTCCCCCTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l11.b1 MSMg01no523_l11.b1 CHROMAT_FILE:
MSMg01no523_l11.b1 PHD_FILE: MSMg01no523_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:43 2005
         (241 letters)



>mm_chr11_25202422_25203062
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcttgtgagcacacttgggaatgtttctgtacctgcgcctacttgctcaattatttcc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tagcttgtgagcacacttgggaatgtttctgtacctgtgcctacttgctcaattatttcc 260

                                                                       
Query: 61  aaaggacaaactcttcatggtagatttccaaagtcacaaggtttaaggttctgataaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggacaaactcttcatggtagatttccaaagtcacaaggtttaaggttctgataaatt 320

                                                                       
Query: 121 gtcatatatctgcaaggagcatttcttcatctaacctctcagcatctctttagaaaagta 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatatatctgcaaggagtatttcttcatctaacctctcagcatctctttagaaaagta 380

                                                                       
Query: 181 agaaaacacacccctgcaaatatggatattttaattttaaaataacctatttccatatgc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agaaaacacagccctgcaaatatggatattttaattttaaaataacctattcccatatgc 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no523_l11.g1 MSMg01no523_l11.g1 CHROMAT_FILE:
MSMg01no523_l11.g1 PHD_FILE: MSMg01no523_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:43 2005
         (380 letters)



>mm_chr11_25322940_25323719
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaaaaacatatgccacatacaaccttgtaaccaaatccttagagtctatggtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 attaaaaaaacatatgccacatacaaccttgtaaccaaatccttagagtctatggtatat 521

                                                                       
Query: 61  tgccagtaaaatgccttggccaagcttcagttctgcctgatgtcacatctatatgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgccagtaaaatgccttggccaagcttcagttctgcctgatgtcacatctatatgagccc 461

                                                                       
Query: 121 tgtgatagcattaaactggccgcagctgtttctgattgaagcactgtagacctctgcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtgatagcattaaactggccgcagctgtttctgattgaagcactgtagacctctgcaag 401

                                                                       
Query: 181 cagggctcacctcttctccaaccattcccaccctcctctggagtgacattaacaaagaga 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 400 cagggctcacctcttctccaaccattcccaccctcttctggagtgacattaacaaagaga 341

                                                                       
Query: 241 cccctctatcaacacaagcccttgagttctgctgactattcgcccagcaatttctggcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 340 cccctctatcaacacaagcccttgagttctgctgactattcgcccggcaatttctggcgg 281

                                                                       
Query: 301 gttggcttaagcttggagtgcttgtgtatatacacattcaagtaagcatgtgtgtgctag 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gttggcttaggcttggagtgcttgtgtatatacacattcaagtaagcatgtgtgtgctag 221

                               
Query: 361 cataggtacgcatgtgcaca 380
           ||||||||||||||||||||
Sbjct: 220 cataggtacgcatgtgcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)